Locus 676

Sequence ID 3L_DroMel_CAF1
Location 2,005,312 – 2,005,420
Length 108
Max. P 0.921489
window1031

overview

Window 1

Location 2,005,312 – 2,005,420
Length 108
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 76.54
Mean single sequence MFE -27.74
Consensus MFE -16.49
Energy contribution -17.44
Covariance contribution 0.95
Combinations/Pair 1.39
Mean z-score -1.96
Structure conservation index 0.59
SVM decision value 1.14
SVM RNA-class probability 0.921489
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2005312 108 + 23771897
AUAGCUUGUGUAAGAACAAUAUCAUCGUUAUAAAAACGGCAGGUAAAAACCUGCAACAGUUAGCUCUUUGUUGAUAUACUUGUUGAGAAUCACUAAACCUCAGCUGUA
(((((..(((((..(((((......((((.....))))((((((....)))))).............)))))..)))))....((((...........))))))))). ( -25.20)
>DroSec_CAF1 55985 108 + 1
AUAGCUUGUGUAAGAGCAAUAUCAGCGUUAUAAAAACGGCAGUUAAAAACCUGCAACAGUUAGCCCUUUGUUUAUAUAAUUGUUGAGAAUCACUGAACCUCAGCUGUA
(((((((((......)))...((((((((.....))))((((........))))((((((((..............))))))))........)))).....)))))). ( -19.84)
>DroSim_CAF1 71002 108 + 1
AUAGCUUGUGUAAGAGCAAUAUCAGCGUUAUAAAAACGGCAGUUAAAAACCUGCAGCAGUUAGCUCUUUGUUGAUAUACUUGUUGAGAAUCACUGAACCUCAGCUGUA
...((((......)))).(((((((((...........((((........))))(((.....)))...)))))))))((..((((((...........)))))).)). ( -24.80)
>DroEre_CAF1 62018 108 + 1
AUAGCUUAUGCAAGAGCAAUAUCAGAGUUAUAAAAACGGCAGGUAAAAACCUGCAAAAGUUUGGCCUUUGUUGAUAUGUUUGUUGAGAUGUAUUAAACCUCAGCUGUA
...((....))..(((((.((((((........((((.((((((....))))))....))))........)))))))))))((((((...........)))))).... ( -27.99)
>DroYak_CAF1 57265 108 + 1
AUAGCUUAUGCAAAAGCAAUAUCAGAGUUAUAAGAACGGCAGGUAAAAAUCUGCAAAAGUUUGGCCUGUGUUGAUAUACUUGUUGAGGUUUACUAAACCUCAGCUGUA
...((((......)))).(((((((........((((.((((((....))))))....))))........)))))))((..(((((((((.....))))))))).)). ( -31.19)
>DroPer_CAF1 80642 108 + 1
CCAUUUGAUGCAGCAGCAGGAUGCAUGCAACAAAGAGGCAUGGAAUGUAUCUGCAGCAGUUGUAUCUAUGGGUGUACAGACGCCGGGAUCUGCUGAAACGCAGCUGCA
........((((((.((.((((((((....((........))..)))))))).((((((....((((...(((((....))))).))))))))))....)).)))))) ( -37.40)
>consensus
AUAGCUUAUGCAAGAGCAAUAUCAGCGUUAUAAAAACGGCAGGUAAAAACCUGCAACAGUUAGCCCUUUGUUGAUAUACUUGUUGAGAAUCACUAAACCUCAGCUGUA
...((((......)))).(((((((((.......(((.((((((....))))))....))).......)))))))))....((((((...........)))))).... (-16.49 = -17.44 +   0.95) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:14 2006