Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,005,312 – 2,005,420 |
Length | 108 |
Max. P | 0.921489 |
Location | 2,005,312 – 2,005,420 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 76.54 |
Mean single sequence MFE | -27.74 |
Consensus MFE | -16.49 |
Energy contribution | -17.44 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.39 |
Mean z-score | -1.96 |
Structure conservation index | 0.59 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921489 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2005312 108 + 23771897 AUAGCUUGUGUAAGAACAAUAUCAUCGUUAUAAAAACGGCAGGUAAAAACCUGCAACAGUUAGCUCUUUGUUGAUAUACUUGUUGAGAAUCACUAAACCUCAGCUGUA (((((..(((((..(((((......((((.....))))((((((....)))))).............)))))..)))))....((((...........))))))))). ( -25.20) >DroSec_CAF1 55985 108 + 1 AUAGCUUGUGUAAGAGCAAUAUCAGCGUUAUAAAAACGGCAGUUAAAAACCUGCAACAGUUAGCCCUUUGUUUAUAUAAUUGUUGAGAAUCACUGAACCUCAGCUGUA (((((((((......)))...((((((((.....))))((((........))))((((((((..............))))))))........)))).....)))))). ( -19.84) >DroSim_CAF1 71002 108 + 1 AUAGCUUGUGUAAGAGCAAUAUCAGCGUUAUAAAAACGGCAGUUAAAAACCUGCAGCAGUUAGCUCUUUGUUGAUAUACUUGUUGAGAAUCACUGAACCUCAGCUGUA ...((((......)))).(((((((((...........((((........))))(((.....)))...)))))))))((..((((((...........)))))).)). ( -24.80) >DroEre_CAF1 62018 108 + 1 AUAGCUUAUGCAAGAGCAAUAUCAGAGUUAUAAAAACGGCAGGUAAAAACCUGCAAAAGUUUGGCCUUUGUUGAUAUGUUUGUUGAGAUGUAUUAAACCUCAGCUGUA ...((....))..(((((.((((((........((((.((((((....))))))....))))........)))))))))))((((((...........)))))).... ( -27.99) >DroYak_CAF1 57265 108 + 1 AUAGCUUAUGCAAAAGCAAUAUCAGAGUUAUAAGAACGGCAGGUAAAAAUCUGCAAAAGUUUGGCCUGUGUUGAUAUACUUGUUGAGGUUUACUAAACCUCAGCUGUA ...((((......)))).(((((((........((((.((((((....))))))....))))........)))))))((..(((((((((.....))))))))).)). ( -31.19) >DroPer_CAF1 80642 108 + 1 CCAUUUGAUGCAGCAGCAGGAUGCAUGCAACAAAGAGGCAUGGAAUGUAUCUGCAGCAGUUGUAUCUAUGGGUGUACAGACGCCGGGAUCUGCUGAAACGCAGCUGCA ........((((((.((.((((((((....((........))..)))))))).((((((....((((...(((((....))))).))))))))))....)).)))))) ( -37.40) >consensus AUAGCUUAUGCAAGAGCAAUAUCAGCGUUAUAAAAACGGCAGGUAAAAACCUGCAACAGUUAGCCCUUUGUUGAUAUACUUGUUGAGAAUCACUAAACCUCAGCUGUA ...((((......)))).(((((((((.......(((.((((((....))))))....))).......)))))))))....((((((...........)))))).... (-16.49 = -17.44 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:14 2006