Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,120,854 – 18,121,058 |
Length | 204 |
Max. P | 0.707917 |
Location | 18,120,854 – 18,120,963 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 83.24 |
Mean single sequence MFE | -32.14 |
Consensus MFE | -22.31 |
Energy contribution | -24.15 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.23 |
Mean z-score | -1.62 |
Structure conservation index | 0.69 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.509726 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18120854 109 - 23771897 GCAUUCGAGAGGCACAAUAUAGCGAACAAUCCUUUAAGGAUGACAGCCCUGCCCCAAAUGCAGUUUACGAUGAUGCAGCUCCUCCGCAGCGAGGAGCUCGUGUUAUCUU (((((.(.(.((((.......((.....((((.....))))....))..)))))).))))).......((((((((((((((((......)))))))).)))))))).. ( -37.70) >DroSec_CAF1 24082 109 - 1 GCAUUCGAGAGGCACUAUAUAACGAACAAUCCUUUAAGGAUGACAGCCCUGCCCCAAAUGCAGUUUACGAUGAUGCAGCUCCUCCGCAGCGAGGAGCUCGUGUUAUCUU (((((.(.(.(((((........)....((((.....))))........)))))).))))).......((((((((((((((((......)))))))).)))))))).. ( -34.70) >DroSim_CAF1 21637 109 - 1 GCAUUCGAGAGGCACAAUAUAACGAGCAAUCCUUUAAGGAUGACAGCCCUGCCCCAAAUGCAGUUUACGAUGAUGCAGCUCCUCCGCAGCGAGGAGCUCGUGUUAUCUU (((((.(.(.((((.........(.((.((((.....))))....)).))))))).))))).......((((((((((((((((......)))))))).)))))))).. ( -36.20) >DroEre_CAF1 24844 109 - 1 GCAUUCGAGAGGCACAACAUAACCAACAGUCCUUUAACGAUGACAGCCCAGCCCCAAAUGCAGUUUACGAUGAUGCAGCUCCUCCGCAGCGGGGAGCUCGUGUUAUCUU (((((.(.(.(((...............((......))..((......))))))).))))).......((((((((((((((.(((...))))))))).)))))))).. ( -30.80) >DroYak_CAF1 24747 109 - 1 GUAUUCGCGAGGCACAAUAUAACCAACAGUCCUUUAAGGAUGAGAGUCCUGUUCCAAAUGCAGUUUACGAUGAAGCAGCUCCUCCGCAGCGAGGAGCUCGUGUUAUCUU (((..(((((((.((.............))))))..(((((....))))).........)).)..)))(((((.((((((((((......)))))))).)).))))).. ( -33.52) >DroAna_CAF1 35558 97 - 1 GGAUUCGAGAAAAUCAAUACAA---------CUUCAAAGAUGAAUCCCCU---CCUAACGCGGUUUAUGAGGACGCUGCUCCACCACAACGCGGUGCAAGAGUGAUAUU ((((((((.....)).......---------((....))..))))))(((---(.(((......))).)))).((((.((.((((.......))))..))))))..... ( -19.90) >consensus GCAUUCGAGAGGCACAAUAUAACGAACAAUCCUUUAAGGAUGACAGCCCUGCCCCAAAUGCAGUUUACGAUGAUGCAGCUCCUCCGCAGCGAGGAGCUCGUGUUAUCUU (((((.(.(.(((...............((((.....))))(......).))))).))))).......((((((((((((((((......)))))))).)))))))).. (-22.31 = -24.15 + 1.84)
Location | 18,120,963 – 18,121,058 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 82.74 |
Mean single sequence MFE | -27.72 |
Consensus MFE | -17.74 |
Energy contribution | -18.78 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.13 |
Mean z-score | -1.96 |
Structure conservation index | 0.64 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.707917 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18120963 95 - 23771897 AGAACAGUUCCGAGAGGAACAACUCCGAGAAGAGGAAGUUCGCAGAGAGCAGCUUCGAGAAGAAGAAAUCCAGAGGCAGCAGGCUCAAAUUCUGC .((((.(((((....)))))...(((.......))).))))(((((((((.(((((..((........))..))))).....))))....))))) ( -33.00) >DroSec_CAF1 24191 95 - 1 ACAACAGUUCCGAGAGGAACAACUUCGAGAAGAGGAAGUUCGCAGGGAGCAACUUCGGGAAGAAGAAAUCCGGAGGCAGCAGGCUCAGAUCCUGC ......(((((....)))))((((((........)))))).(((((((((..((((.(((........))).))))......))))....))))) ( -32.90) >DroSim_CAF1 21746 95 - 1 ACAACAGUUCCGAGACGAACAACUCAGAGAAGAGGAAGUUCGCAGGGAGCAACUUCGGGAAGAAGAAAUCCGGAGGCAGCAGGCUCAGAUCCUGC ......(((((..(.(((((..(((......)))...))))))..)))))..((((.(((........))).))))..(((((.......))))) ( -30.10) >DroEre_CAF1 24953 77 - 1 AC------------------AGCUCCGAGAAGAGGAGGUUCGCAGGGAGCAACUUCGGGAAGAUGAAAUCCGGAGGCAGCAGGCUCAGAUCCAGC ..------------------..((((.......))))....((.((((((..((((.(((........))).))))......))))....)).)) ( -19.50) >DroYak_CAF1 24856 95 - 1 ACAACAGUACCUAGAUGAACAACUCCGGGAAGAGGAGGUUCGCAGGGAGAAACUUCGGGAAGAUAAAAUCCUCAGGGAGCAGGCUCAGAUUCUGC .........(((.(.(((((..((((.......)))))))))).)))((((.(((.((((........)))).)))(((....)))...)))).. ( -23.10) >consensus ACAACAGUUCCGAGAGGAACAACUCCGAGAAGAGGAAGUUCGCAGGGAGCAACUUCGGGAAGAAGAAAUCCGGAGGCAGCAGGCUCAGAUCCUGC ................((((..(((......)))...))))(((((((((..((((.(((........))).))))......))))....))))) (-17.74 = -18.78 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:18 2006