| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,120,007 – 18,120,102 |
| Length | 95 |
| Max. P | 0.782462 |
| Location | 18,120,007 – 18,120,102 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 74.31 |
| Mean single sequence MFE | -24.53 |
| Consensus MFE | -12.16 |
| Energy contribution | -12.42 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.782462 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18120007 95 - 23771897 UAGAACGAGCUGCCAGCUGAAUUGACGCAUAAAUCUAGCGGCAA-C------------AGGAAUACGUUUGAAAAAUUAAAUGUGAUAAACCGGGACA-AUAAUGGAAA .....((.(.((((.((((.(((........))).)))))))).-)------------.....(((((((((....)))))))))......)).....-.......... ( -17.20) >DroVir_CAF1 24644 105 - 1 UGAAAUAUGC----AAAAGAAAUGGCACAUAAAUCUAGAGACAAACGGCGUCAUCGCGGGGAAUACGUUUGAAAAAUUAAAUGUGAUAAACCGAGAGACACCAGGGAUA .......(((----...(....).)))...................((.(((.((.(((..(.(((((((((....))))))))).)...))).))))).))....... ( -21.20) >DroPse_CAF1 32734 107 - 1 UGGAAUACGCUCCGAGCGGAAUUGCCGCAUAAAUCUAGCGGCAAACGGCAGCAUC-CAGGGAAUAUGUUUGAAAAAUUAAAUGUGAUAAACCCGAAGC-GAAGGCGAAG ((((...(((.....)))...(((((((.........))))))).........))-))(((..(((((((((....))))))))).....)))...((-....)).... ( -29.20) >DroYak_CAF1 23935 96 - 1 UGAAUUCCGCUGCCAGCGGAAUUGUCGCAUAAAUCUAGCGGCAAGC------------AGAAAUACGUUUGAAAAAUUAAAUGUGAUAAACCGGGACA-AUAAUGGAAA ..((((((((.....))))))))(((.(.....(((.((.....))------------)))..(((((((((....))))))))).......).))).-.......... ( -25.30) >DroAna_CAF1 34769 107 - 1 UGAAACGAGCUGUCUGUGGAAUUGCCGCAUAAAUCCAGUGGCAAACGGCCUCAUC-CAGGGAAUACGUUUGAAAAAUUAAAUGUGAUAAACUCAAACA-GAAAAGUAAA ......((((((..((.((..(((((((.........)))))))....)).))..-)))....(((((((((....))))))))).....))).....-.......... ( -25.10) >DroPer_CAF1 33496 107 - 1 UGGAAUACGCUCCGAGCGGAAUUGCCGCAUAAAUCUAGCGGCAAACGGCAGCAUC-CAGGGAAUAUGUUUGAAAAAUUAAAUGUGAUAAACCCGAAGC-GAAGGCGAAG ((((...(((.....)))...(((((((.........))))))).........))-))(((..(((((((((....))))))))).....)))...((-....)).... ( -29.20) >consensus UGAAAUACGCUGCCAGCGGAAUUGCCGCAUAAAUCUAGCGGCAAACGGC__CAUC_CAGGGAAUACGUUUGAAAAAUUAAAUGUGAUAAACCCGAACA_AAAAGGGAAA .......(((.....)))...(((((((.........)))))))...................(((((((((....)))))))))........................ (-12.16 = -12.42 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:16 2006