Locus 6754

Sequence ID 3L_DroMel_CAF1
Location 18,110,912 – 18,111,002
Length 90
Max. P 0.994433
window10981

overview

Window 1

Location 18,110,912 – 18,111,002
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 88.51
Mean single sequence MFE -27.08
Consensus MFE -22.80
Energy contribution -23.24
Covariance contribution 0.44
Combinations/Pair 1.25
Mean z-score -2.44
Structure conservation index 0.84
SVM decision value 2.48
SVM RNA-class probability 0.994433
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18110912 90 + 23771897
GAUUUCUCGUUUGACUGGGUGGAGUUUAAUUGGCCUAGUAUAAUGUGACUUAAAGUACGGUACAUUGCAUGCCAAGUCAGAUGGGAAAUC
((((((((((((((((((((.((......)).)))).((((((((((.((........))))))))..))))..)))))))))))))))) ( -30.80)
>DroSec_CAF1 14075 88 + 1
GAUUUCUCGUUUGACUGGGUGGAGUUUAAUUGGCCUAGCAUAUUGUGACUUAAAG--CGGUACUUCGCAUGCCAAAUCAGAUGGGAAAUC
((((((((((((((((((((.((......)).))))))................(--(((....))))........)))))))))))))) ( -30.20)
>DroSim_CAF1 11512 88 + 1
GAUUUCUCGUUUGACUGGGUGGAGUUUAAUUGGCCUAGUAUAAUGUGACUUAAAG--CGGUACAUCGCAUGCCAAGUCAGAUGGAAAAUC
(((((..(((((((((.(((.(((((..((((........))))..)))))...(--(((....))))..))).)))))))))..))))) ( -27.40)
>DroEre_CAF1 14719 88 + 1
GAUUUCUCGUUUGGCUGGGUGGAGUUUAAUUGGCCUAGUGUAAUGUGACUUAAAG--CGGUAUAUCGCAUGCUCAGUCUGAUGCGAAGUC
((((((.((((.((((((((.(((((..((((........))))..)))))...(--(((....))))..)))))))).)))).)))))) ( -27.20)
>DroYak_CAF1 14533 88 + 1
GAUUUCUCGUUUCACUGGGCGGAGUUUAAUUGGCAUAGCAUUAUGCGACUUAAAG--CGGUAUAUCGCAUGCUAAGUCUAAUAGAAAAUC
..(((((.(((..(((.((((...(((((.(.(((((....))))).).)))))(--(((....)))).)))).)))..))))))))... ( -19.80)
>consensus
GAUUUCUCGUUUGACUGGGUGGAGUUUAAUUGGCCUAGUAUAAUGUGACUUAAAG__CGGUACAUCGCAUGCCAAGUCAGAUGGGAAAUC
((((((((((((((((((((.((......)).)))).(((...(((((..((........))..))))))))..)))))))))))))))) (-22.80 = -23.24 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:12 2006