| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,110,277 – 18,110,380 |
| Length | 103 |
| Max. P | 0.790313 |
| Location | 18,110,277 – 18,110,380 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 76.30 |
| Mean single sequence MFE | -38.55 |
| Consensus MFE | -21.37 |
| Energy contribution | -21.98 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.790313 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18110277 103 - 23771897 -------UCGGAUC-CAGU---GGCUAGACCCUCACUUUGUAGCUGAGCUUCAUCAGCUUCUUGGAGCUGAUCGGGCAAUUUGGCCAGAGAUUGGCGCAUCCCAUAGGUCCGCU -------.((((.(-(.((---((......((...(((((..((..((((..((((((((....))))))))..)))...)..)))))))...))......)))).)))))).. ( -36.90) >DroVir_CAF1 13353 105 - 1 CACAUUAG-----C-CGGCGC---CUAAACACGCACCUUGUAGCUAAGCUUCAUCAGCUUCUUGGAGCUGAUGGGGCAGUUCGGCCAGAGAUUGGCGCAACCCAUGGGACCGCU .......(-----(-(((((.---.......))).............(((((((((((((....)))))))))))))....))))........((((...((....))..)))) ( -37.90) >DroPse_CAF1 21354 110 - 1 CACAUGGUCGGAUCACAGU----CCUAGACCUUGACUUUGUAGCUCAGCUUCAUGAGCUUCUUGGAGCUGAUCGGGCAAUUGGGCCACAGGUUGGCACAGCCCAUCGGUCCGCU ..((.((((((((....))----))..)))).)).....(.((((((......)))))).)..(((.(((((.((((...((.((((.....)))).))))))))))))))... ( -39.80) >DroMoj_CAF1 16879 108 - 1 CACAUUGG-----C-UGGCAUCAACUAAACGCGCACCUUAUAGCUCAGUUUCAUCAGCUUCUUGGAGCUGAUGGGGCAGUUGGGCCAGAGAUUGGCACAGCCCAUGGGACCGCU ..(((.((-----(-((...((((((....(.((........)).).((..(((((((((....)))))))))..))))))))(((((...))))).))))).)))........ ( -44.10) >DroAna_CAF1 25949 101 - 1 -------AUGGAU---GGU---UUUUAGACGCGAACUUUAUAGCUGAGUUUCAUUAGCUUCUUUGAGCUAAUGGGGCAAUUGGGCCACAGGUUGGCACAUCCCAUGGGUCCGCU -------..((((---(((---(....)))((.(((((....(((.(((..(((((((((....)))))))))..))...).)))...))))).)).)))))............ ( -32.80) >DroPer_CAF1 21590 110 - 1 CACAUGGUCGGAUCACAGU----CCUAGACCUUGACUUUGUAGCUCAGCUUCAUGAGCUUCUUGGAGCUGAUCGGGCAAUUGGGCCACAGGUUGGCACAGCCCAUCGGUCCGCU ..((.((((((((....))----))..)))).)).....(.((((((......)))))).)..(((.(((((.((((...((.((((.....)))).))))))))))))))... ( -39.80) >consensus CACAU_GUCGGAUC_CAGU____CCUAGACCCGCACUUUGUAGCUCAGCUUCAUCAGCUUCUUGGAGCUGAUCGGGCAAUUGGGCCACAGAUUGGCACAGCCCAUGGGUCCGCU .........................................(((...((((.((((((((....)))))))).))))....(((((......(((......)))..)))))))) (-21.37 = -21.98 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:11 2006