Locus 6752

Sequence ID 3L_DroMel_CAF1
Location 18,103,200 – 18,103,301
Length 101
Max. P 0.847316
window10979

overview

Window 9

Location 18,103,200 – 18,103,301
Length 101
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 92.20
Mean single sequence MFE -34.50
Consensus MFE -28.66
Energy contribution -28.30
Covariance contribution -0.36
Combinations/Pair 1.15
Mean z-score -2.28
Structure conservation index 0.83
SVM decision value 0.77
SVM RNA-class probability 0.847316
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18103200 101 + 23771897
AGUAUUGG--GUAGUUGGUCAACCUCAAGAUUUGCAGUUAGCAGUGGCAGUUGCCUCGACUUCUCGACGGUUGCACUGCGCUUGACUGCAAUUUGGCCAAGUU
........--....((((((((.........(((((((((((((((.((...(((((((....)))).)))))))))))...))))))))).))))))))... ( -34.30)
>DroSec_CAF1 6325 101 + 1
AGUUUUGG--GUAGUUGGUCAACCUCAAGAUUUGCAGUUAGCAGUGGCAGUUGCCUCGACUUCUCGACGGUUGCACUGCGCUUGACUGCAAUUUGGCCAAGUU
........--....((((((((.........(((((((((((((((.((...(((((((....)))).)))))))))))...))))))))).))))))))... ( -34.30)
>DroSim_CAF1 3334 101 + 1
AGUUUUGG--GUAGUUGGUCAACCUCAAGAUUUGCAGUUAGCAGUGGCAGUUGCCUCGACUUCUCGACGGUUGCACUGCGCUUGACUGCAAUUUGGCCAAGUU
........--....((((((((.........(((((((((((((((.((...(((((((....)))).)))))))))))...))))))))).))))))))... ( -34.30)
>DroEre_CAF1 6670 101 + 1
AGUAUUGG--GUAGUUGGUCAACUUCAAGACUUGCAGUUAGCAGUGGCAGUUGCCUCGACUUCUCGGCGAUUGCACUUCGCUUGACUGCAAUUUGGCCAAGUU
........--....(((((((((.....)..(((((((((((((((.((((((((..(....)..))))))))))))..)).))))))))).))))))))... ( -35.40)
>DroYak_CAF1 6504 101 + 1
AGUAUUGG--GUAGUUGGUCAACCUCAAGAUUUGCAGUUAGCAGUGGCAGUUGCCUCGACUUCUCGACGGUUGCACUUCGCUUGACUGCAAUUUGGCCAAGUU
........--....((((((((.........(((((((((((((((.((...(((((((....)))).)))))))))..)).))))))))).))))))))... ( -30.90)
>DroAna_CAF1 19050 102 + 1
AGUUUCGAAACUUGGUGGUCAACCUCAA-AUUUGCAGUUAGCAGUGGCAGUUGCCUCGACUUCUUGGCAAUUGCACUUCACUUGACUGCAUUUUGACCAAGAC
..........((((((((....)).(((-(..((((((((..(((((((((((((..(....)..)))))))))....)))))))))))).)))))))))).. ( -37.80)
>consensus
AGUAUUGG__GUAGUUGGUCAACCUCAAGAUUUGCAGUUAGCAGUGGCAGUUGCCUCGACUUCUCGACGGUUGCACUGCGCUUGACUGCAAUUUGGCCAAGUU
..............((((((((.........(((((((((((((((.((((((..((((....))))))))))))))..)).))))))))).))))))))... (-28.66 = -28.30 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:10 2006