| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,100,894 – 18,100,994 |
| Length | 100 |
| Max. P | 0.832386 |
| Location | 18,100,894 – 18,100,994 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 83.08 |
| Mean single sequence MFE | -24.80 |
| Consensus MFE | -18.40 |
| Energy contribution | -19.24 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.832386 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18100894 100 + 23771897 CAAAGGUGAGCCGAGCAAAGCCCAAAGGGCAACCGCAAGUGGGCGAAGGAUUACACCUUUAAA-AAUUUUAACUU-UUGUUAAUAAAUAGAGAAAGUAUCAU-- .(((((((..((.......(((((..((....)).....)))))...))....)))))))...-.......((((-((.(((.....))).)))))).....-- ( -26.40) >DroSec_CAF1 4159 102 + 1 CAAAGGUGAGCCGAGCAAAGCCCAAAGGGCAACCGCAAGUUGGCGAAGGAUUACACCUUAAAA-AAUGUUAAGCU-UUGUUAAUAUGUAAGAAAAGUAUUUUGC ..((((((..((..((...((((...))))...(....)...))...))....))))))....-.(((((((...-...)))))))((((((......)))))) ( -22.70) >DroSim_CAF1 768 102 + 1 CAAAGGUGAGCCGAGCAAAGCCCAAAGGGCAACCGCAAGUGGGCGAAGGAUUACACCUUAAAA-AAUGUUAAGCU-UUGUUAAUAUUGAAGAAAAGUAUUUUGC ..((((((..((.......(((((..((....)).....)))))...))....))))))....-((((((((...-...))))))))................. ( -25.50) >DroEre_CAF1 4080 104 + 1 CAAAGGUAAGCCGAGCAAAGCCCAAAGGGCAACCGCAAGUGGGCGAAGGAUUACACUGGCAGAAAAAAUAAUGCUUUUGAGUAUUUAUAAAGGAAAUAUUUUGC ....((....))..(((((((((...))))..((((.((((..(....)....)))).)).........((((((....))))))......))......))))) ( -24.30) >DroYak_CAF1 4205 103 + 1 CUAAGGUAAGCCGAGCAAAGCCCAAAGGGCAACCGCAAGUGGGCGAAGGAAUACACCUUAAGAAAACAUUAGGUUUUUG-UUAAAUAUAGAGGAAGUAUUUUGC ....((....))..((...(((((..((....)).....)))))...(((((((.((((..((((((.....)))))).-.........))))..))))))))) ( -25.10) >consensus CAAAGGUGAGCCGAGCAAAGCCCAAAGGGCAACCGCAAGUGGGCGAAGGAUUACACCUUAAAA_AAUAUUAAGCU_UUGUUAAUAUAUAAAGAAAGUAUUUUGC ..((((((..((.......(((((..((....)).....)))))...))....))))))............................................. (-18.40 = -19.24 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:09 2006