Locus 6750

Sequence ID 3L_DroMel_CAF1
Location 18,093,701 – 18,093,812
Length 111
Max. P 0.500000
window10977

overview

Window 7

Location 18,093,701 – 18,093,812
Length 111
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.41
Mean single sequence MFE -35.33
Consensus MFE -26.92
Energy contribution -27.18
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.46
Structure conservation index 0.76
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18093701 111 + 23771897
AUUAAUGCCGCUGGGGUUGGGUCGCCAUAAAAGCCGGCAAGGAUUCAUAUGGAUAAUUAAGUUAUGGCGGGUGCCAACAGAAGGGUUAAA-------GCCUCC--CUCCGCGAUUGCAUA
....(((((((.((((((((.(((((((((...((.....))((((....)))).......)))))))))...)))))....((((....-------))))))--)...)))...)))). ( -34.50)
>DroSec_CAF1 20039 108 + 1
AUUAAUGCCGC-GGGGCUGGGUCGCCAUAAAAGCCUGCAAGGAUUCAUACGGAUAAUUAAGUUAUGGCGGGUGCCAACAGAAGGGUUAAA-------GCCUCC----CCGCGAUUGCAAG
.....((((((-((((((((((((((((((...((.....))((((....)))).......))))))))...)))..)))..((((....-------))))))----)))))...))).. ( -36.00)
>DroEre_CAF1 20568 108 + 1
AUUAAAGCCGC-GGGGUUGGGUCGCCAUAAAAGCCUGCAAGGAUUCAUAUGGAUAAUUAAGUUAUGGCGGGUGCCAACGGAAGGGUUAAA-------GCCUCC----CCGCGAUUGCAAA
......(((((-((((((((.(((((((((...((.....))((((....)))).......)))))))))...)))))....((((....-------)))).)----)))))...))... ( -36.80)
>DroYak_CAF1 27460 119 + 1
AUUAAAGCCGC-GGGGUUGGGUCGCCAUAAAAGCCUGGAAGGAUUCAUAUGGAUAAUUAAGUUAUGGCGGGUGCCAACAGAAGGGUUAAAGUCCAAAGCCUCCCCCUCCGCGAAUGCAAA
......(((((-((((..((((((((((((...((.....))((((....)))).......)))))))))............(((((.........)))))))).)))))))...))... ( -34.00)
>consensus
AUUAAAGCCGC_GGGGUUGGGUCGCCAUAAAAGCCUGCAAGGAUUCAUAUGGAUAAUUAAGUUAUGGCGGGUGCCAACAGAAGGGUUAAA_______GCCUCC____CCGCGAUUGCAAA
......(((((.((.(((((.(((((((((...((.....))((((....)))).......)))))))))...)))))....((((...........))))......)))))...))... (-26.92 = -27.18 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:08 2006