Locus 675

Sequence ID 3L_DroMel_CAF1
Location 2,004,973 – 2,005,076
Length 103
Max. P 0.885638
window1030

overview

Window 0

Location 2,004,973 – 2,005,076
Length 103
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 76.83
Mean single sequence MFE -25.57
Consensus MFE -14.13
Energy contribution -12.45
Covariance contribution -1.69
Combinations/Pair 1.61
Mean z-score -2.02
Structure conservation index 0.55
SVM decision value 0.94
SVM RNA-class probability 0.885638
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2004973 103 - 23771897
UACGACGUCCUCAUACAUGGCCUACUCUUGAUACUUCUACUAGCUGUGAUGGUAGUUGAUAUUAUAUUUUUCAACUGGCCAAAAGCGUCUGGCGAACGCAAUA
...(((((.......((((((........((....)).....)))))).((((((((((...........)))))).))))...)))))..((....)).... ( -22.32)
>DroSec_CAF1 55646 103 - 1
UGGGACGUCCUCAUACAUGGCCUACUCUUGAUACUUCUACUAGCUGUGCUGGUAGUUGAUAUUAUAUUUUUCAACUGGCCAAAAGCUUCUGGCGAACCCAAUA
((((.((((........(((((...............(((((((...)))))))(((((...........))))).))))).........))))..))))... ( -27.73)
>DroSim_CAF1 70663 103 - 1
UGGGACGUUCUCAUACAUGGCCUACUCUUGAUACUUCUAUUAGCUGUGAUGCUAGUUGAUAUUAUAUUUUUCAACUGGCCAAAAGCGUCUGACGAGCCCAAUA
((((.((((......((((((........((....)).....))))))..(((((((((...........)))))))))...........))))..))))... ( -24.62)
>DroEre_CAF1 61679 103 - 1
UGGGUCGUCCUCAUAUAUGUCAUACUUUUGCUACUUUUACUAGCUAUGAUGUUAGUUAACAUUGUAUUUCUCAACUGGCCAAAAACUUCUGGCGAACCCAAUA
(((((((((.........((((.......((((.......))))((..(((((....)))))..)).........))))...........)))).)))))... ( -21.15)
>DroYak_CAF1 56926 103 - 1
UGGGUCGUUCUCAUACAUGGCAUACUUUUGCUACUUUUACUAGCUGCUAUAGUAGUUGACAUUGUAUUUCUUAACUGGCCAAAAACGUCUGGAGAACCCAAUA
(((((...((((((((((((((......))))).......(((((((....)))))))....))))).......(.(((.......))).))))))))))... ( -24.50)
>DroAna_CAF1 54556 103 - 1
UGGCUCGCUUUCAUCUAUGGAAUAGUUUUGAUCCUGCUGAUAGCCACUUUUGUGGCUAAAACUUUUUAUUUUGACUUUCCACAUCUGAAAGGUGAUGCCAAAA
(((((((((((((....(((((.((((..(((........(((((((....))))))).........)))..)))))))))....))))).)))).))))... ( -33.13)
>consensus
UGGGACGUCCUCAUACAUGGCAUACUCUUGAUACUUCUACUAGCUGUGAUGGUAGUUGAUAUUAUAUUUUUCAACUGGCCAAAAGCGUCUGGCGAACCCAAUA
((((.((((........(((((.....((((.........((((((......))))))............))))..))))).........))))..))))... (-14.13 = -12.45 +  -1.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:13 2006