Locus 6748

Sequence ID 3L_DroMel_CAF1
Location 18,088,117 – 18,088,216
Length 99
Max. P 0.929530
window10971

overview

Window 1

Location 18,088,117 – 18,088,216
Length 99
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 75.26
Mean single sequence MFE -34.23
Consensus MFE -11.93
Energy contribution -14.57
Covariance contribution 2.64
Combinations/Pair 1.24
Mean z-score -2.64
Structure conservation index 0.35
SVM decision value 1.20
SVM RNA-class probability 0.929530
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18088117 99 + 23771897
AAUAAUUUUG--GCACGAGGUGUGACCAACGCCCAUUGAGGGUGUGGUUAAUGACACUCAGCCUUCUGUCUG--CCAAGUCAA---UCGCUUGCCAAUUGAUUUGU
.........(--(((.(((((.((((((.(((((.....))))))))))).((.....))))))).))))..--.((((((((---(.(.....).))))))))). ( -31.50)
>DroVir_CAF1 10751 94 + 1
AACAGUUCUG--UGGCGAGGUGU---CAUCGCCAAUAG-----GUCACUUAAGGCCCUUAGCCUUCUGUGGC--CACCAUCGAGUGGCAUUUGCCAAUUGAUUUGU
.((((.((..--(((((((.(((---(((((......(-----(((((..(((((.....)))))..)))))--).....))).))))))))))))...)).)))) ( -36.90)
>DroGri_CAF1 16366 97 + 1
AACACAA-UUCGGGGCGAGGUGU---CAACGUCAAUGG-----GUCACUGAAAGCCCUCAGCCUUCUGUGGCUGUGGAGUGGAGUGUCAUUCGCCAUUUGAUUUGU
...((((-.(((.((((((..(.---...)..).....-----(.((((....((((.(((((......))))).)).))..)))).)..)))))...))).)))) ( -31.90)
>DroSec_CAF1 14361 99 + 1
AAUAAUUUUG--GCACGAGGUGUGACCAACGCCCAUUGAGGGUGUGGUUAAUGACACUCAGCCUUCUGUCUG--CCAAGUCAA---UCGCUUGCCGAUUGAUUUGU
.........(--(((.(((((.((((((.(((((.....))))))))))).((.....))))))).))))..--.((((((((---(((.....))))))))))). ( -37.40)
>DroEre_CAF1 15019 99 + 1
AAUAAUUUUG--GCACGAGGUGUGACCAACGCCCAUUGAGGGUGUGGUUGAUGACACUCAGCCUUCUGUCUC--CCAAGUCAA---UCGUUUGCCAAUUGAUUUGU
.........(--(((.(((((..(((((.(((((.....))))))))))..((.....))))))).))))..--.((((((((---(.(.....).))))))))). ( -30.70)
>DroYak_CAF1 17761 99 + 1
AAUAAUUUUG--GCACGAGGUGUGACCAACGCCCAUUGAGGGUGUGGUUAAUGGCACUCAGCCUUCUGUCUC--CCAAGUCAA---UCGCUUGCCGAUUGAUUUGU
.........(--(((.(((((.((((((.(((((.....)))))))))))..........))))).))))..--.((((((((---(((.....))))))))))). ( -37.00)
>consensus
AAUAAUUUUG__GCACGAGGUGUGACCAACGCCCAUUGAGGGUGUGGUUAAUGACACUCAGCCUUCUGUCUC__CCAAGUCAA___UCGCUUGCCAAUUGAUUUGU
................(((((.((((((.(((((.....)))))))))))...)).)))................((((((((....(....)....)))))))). (-11.93 = -14.57 +   2.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:03 2006