Locus 6747

Sequence ID 3L_DroMel_CAF1
Location 18,085,548 – 18,085,668
Length 120
Max. P 0.887448
window10970

overview

Window 0

Location 18,085,548 – 18,085,668
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 87.92
Mean single sequence MFE -38.06
Consensus MFE -28.73
Energy contribution -29.85
Covariance contribution 1.12
Combinations/Pair 1.06
Mean z-score -2.20
Structure conservation index 0.75
SVM decision value 0.95
SVM RNA-class probability 0.887448
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18085548 120 + 23771897
GCCGUUUGAUCAUAUUGAUUUUGAUGAGAUGGCACAUUUCAUCGAGGAUCUCGGAGCAAGAAAUGACCAGAGUAUGGUGCACCUGAAAGUGCCAAAAUUUGGCUACGAGGAAAUGUUAUG
(((((((.((((.........)))).)))))))(((((((.(((.((.(((.......))).....(((((...(((..(........)..)))...))))))).))).))))))).... ( -36.20)
>DroSec_CAF1 11789 120 + 1
GCCAUUUGAUCAUGUUGAUUUUGAUGAGAUGGCUCAUUUCAUCGAGGAUCUCGGAGCAGAGAAUGACCAGAGUGUGGUGCACCUGAAAGUGCCAAAAUUUGGCUACGAGGAAAUGUUAUG
(((((((.((((.........)))).))))))).((((((.(((.((.((((......))))....(((((...(((..(........)..)))...))))))).))).))))))..... ( -40.70)
>DroEre_CAF1 12543 120 + 1
GCCGUUUGAUCAUGUAGAUUUUGAUGAGAUGGCACAUGCCAUCGAGGCUCACGGAGCACAGAAUGACCAGAGCGUGGUGCAUCUGAAAGUGCCAAAAUUUGGCUACGAGGAAAUGGUCUG
(((((((..((..((((((((((....((((((....))))))...((((...)))).))))))..(((((...(((..(........)..)))...)))))))))))..)))))))... ( -42.10)
>DroYak_CAF1 15198 120 + 1
GCCGUUUGAGCACAUAGAUUUUGAUGAAAUGGCUCAUUACAUAGAGGAGCACAGAGCAAGGAAUGGCCAGAGCGUGGUGCAUCUGAAGGUGCCAAAAUUUGGCUACGAGGAACUGUUCUG
...((.(((((.(((.............))))))))..))...........(((((((.....((((((((...(((..(........)..)))...))))))))........))))))) ( -33.24)
>consensus
GCCGUUUGAUCAUAUAGAUUUUGAUGAGAUGGCACAUUUCAUCGAGGAUCACGGAGCAAAGAAUGACCAGAGCGUGGUGCACCUGAAAGUGCCAAAAUUUGGCUACGAGGAAAUGUUAUG
(((((((.((((.........)))).))))))).((((((.(((((..........((.....)).(((((...(((..(........)..)))...))))))).))).))))))..... (-28.73 = -29.85 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:02 2006