Locus 6746

Sequence ID 3L_DroMel_CAF1
Location 18,083,886 – 18,083,994
Length 108
Max. P 0.876523
window10969

overview

Window 9

Location 18,083,886 – 18,083,994
Length 108
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.61
Mean single sequence MFE -26.50
Consensus MFE -15.38
Energy contribution -15.27
Covariance contribution -0.11
Combinations/Pair 1.35
Mean z-score -1.81
Structure conservation index 0.58
SVM decision value 0.89
SVM RNA-class probability 0.876523
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18083886 108 + 23771897
ACAA-ACCCUGUAAUCACAUGUGUCC-UCCACAAUUUUUCACAUUCCAUGCCAGAAGGGGUGG---GAUUAUGUGUGAUUAAAUCCUU------CAGAUA-CCCAAGUAUUCAUAUGUAA
(((.-......((((((((((((...-..)))..........(((((((.((....)).))))---)))...))))))))).......------..((((-(....)))))....))).. ( -23.70)
>DroPse_CAF1 10471 114 + 1
ACAACACCCCCUAAUCACAUGUGUGUGUGCAC------CCACCCCCCAAUCCUGGAGAGAUGCGGGUGCUAUUCGUGAUUACAUCCUUCUCCUUCGGAUGGUCCCCGCAUUCAUAUGUAA
................(((((((.(((.....------.)))...(((....)))...((((((((..(((((((.((.........)).....)))))))..))))))))))))))).. ( -31.10)
>DroSec_CAF1 10157 108 + 1
ACCA-GCCCCGUAAUCACAUGUGUCC-UCCACAAUUUUUCACAUUCCAUGCCAGAAGGGGUGG---GAUUAUGUGUGAUUAAAUCCAU------CAGAUA-CCCAAGUAUUCAUAUGUAA
....-......((((((((((((...-..)))..........(((((((.((....)).))))---)))...)))))))))....(((------..((((-(....)))))...)))... ( -23.70)
>DroEre_CAF1 10904 108 + 1
ACAA-ACGCCGUAAUCACAUGUGUCC-UCCACAAUUUUUCACAUUCCAUGCCAGAAAGGGUGG---GAUUAUAUGUGAUUAAAUCCGU------CAGAUA-CCCAGAUAUUCAUGUGUAA
.(..-(((...((((((((((((..(-.((((..(((((..(((...)))..)))))..))))---)..))))))))))))....)))------..).((-(.((........)).))). ( -25.50)
>DroYak_CAF1 13341 108 + 1
ACAA-ACGCCGUAAUCACAUGUGUCC-UCCACAAUUUUUUACAUUCCAUGCCAGAAGGGGUGG---GAUUAUAUGUGAUUAAAUCCUU------CAGAUA-CCCAAGUAUUCAUAUGUAA
(((.-......((((((((((((..(-.((((..(((((..(((...)))..)))))..))))---)..)))))))))))).......------..((((-(....)))))....))).. ( -23.90)
>DroPer_CAF1 10598 114 + 1
ACAACACCCCCUAAUCACAUGUGUGUGUGCAC------CCACCCCCCAACCCUGGAGAGAUGCGGGUGCUAUUCGUGAUUACAUCCUUCUCCUUCGGAUGGUCCCCGCAUUCAUAUGUAA
................(((((((.(((.....------.)))...(((....)))...((((((((..(((((((.((.........)).....)))))))..))))))))))))))).. ( -31.10)
>consensus
ACAA_ACCCCGUAAUCACAUGUGUCC_UCCACAAUUUUUCACAUUCCAUGCCAGAAGGGGUGG___GAUUAUAUGUGAUUAAAUCCUU______CAGAUA_CCCAAGUAUUCAUAUGUAA
...........((((((((((((((...((((...(((((.............))))).))))...))).)))))))))))....................................... (-15.38 = -15.27 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:00 2006