| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,083,062 – 18,083,153 |
| Length | 91 |
| Max. P | 0.902636 |
| Location | 18,083,062 – 18,083,153 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 78.76 |
| Mean single sequence MFE | -14.89 |
| Consensus MFE | -10.42 |
| Energy contribution | -10.59 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.902636 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18083062 91 + 23771897 GCUUCGUUUAUUAAUUGUACAACUGUCUCCAAUCAUAAUUAAUGAACUUU-GGCACAUCCUCCGCCGCA-AACUCCACAUAUCCCUUAUUUC-A---------------- ((...(((((((((((((................)))))))))))))...-(((.........))))).-......................-.---------------- ( -14.29) >DroVir_CAF1 6388 86 + 1 GCUUCGUUUAUUAAUUGUACAACUGUCUCCAAUCAUAAUUAAUGAACUUUGGGCACAUCCU-----ACA-AACGUCACAUAGACUCGAGUCG------------------ ((((.(((((((((((((................)))))))))))))...)))).......-----...-...........(((....))).------------------ ( -14.19) >DroPse_CAF1 9121 100 + 1 GCUUCGUUUAUUAAUUGUACAACUGUCUCCAAUCAUAAUUAAUGAACUUUCGGCACAUCCUUUGCCGCAGAACUCCACAUAUCACCCAUCCC-CCAUCGCC--------- ((...(((((((((((((................)))))))))))))((((((((.......))))).))).....................-.....)).--------- ( -16.29) >DroGri_CAF1 9091 97 + 1 GCUUGUUUUAUUAAUUGUUUAACUGUCUCCAAUCAUAAUUAAUGAACUUUGGGCACAUCCC-----ACA-AGCAUCACAUAUCCUCGCGUCU-------GUCCUGUCCGU ((((((((((((((((((................))))))))))))....(((.....)))-----)))-)))...................-------........... ( -15.99) >DroSec_CAF1 9377 92 + 1 GCUUCGUUUAUUAAUUGUACAACUGUCUCCAAUCAUAAUUAAUGAACUUU-GGCACAUCCUCCGCCGCA-AACUCCACAUAGCCCUUAUUUUGG---------------- ((...(((((((((((((................)))))))))))))...-(((.........))))).-........................---------------- ( -14.29) >DroEre_CAF1 10098 91 + 1 GCUUCGUUUAUUAAUUGUACAACUGUCUCCAAUCAUAAUUAAUGAACUUU-GGCACAUCCUCCGCCGCA-AACUCCACAUGUCCCUUAUUUC-G---------------- ((...(((((((((((((................)))))))))))))...-(((.........))))).-......................-.---------------- ( -14.29) >consensus GCUUCGUUUAUUAAUUGUACAACUGUCUCCAAUCAUAAUUAAUGAACUUU_GGCACAUCCUCCGCCGCA_AACUCCACAUAUCCCCUAUUCC__________________ (((..(((((((((((((................)))))))))))))....)))........................................................ (-10.42 = -10.59 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:59 2006