Locus 6743

Sequence ID 3L_DroMel_CAF1
Location 18,070,884 – 18,070,975
Length 91
Max. P 0.958550
window10964

overview

Window 4

Location 18,070,884 – 18,070,975
Length 91
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 88.06
Mean single sequence MFE -24.67
Consensus MFE -22.33
Energy contribution -21.83
Covariance contribution -0.50
Combinations/Pair 1.26
Mean z-score -2.01
Structure conservation index 0.91
SVM decision value 1.49
SVM RNA-class probability 0.958550
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18070884 91 - 23771897
UGCACAUGCAAAAAGGCAGCAGCAGCA---AGAACAACAACAAAAACUCCAUCUGAGAGCUUUAAAGCCGAAGUUCUCGACGCAGACGUCGGCG
(((...(((......)))...)))((.---........................(((((((((......)))))))))((((....)))).)). ( -23.50)
>DroSec_CAF1 16299 94 - 1
UGCACAUGCAAAAAGGCAGCAGCAGCAACAAAAACAACAACAAAAACUCCGUCUGAGAGCUUUAAAGCCGAAGUUCUCGACGCAGGCGUCGGCG
(((...(((......)))...))).........................((((.(((((((((......)))))))))((((....)))))))) ( -26.00)
>DroSim_CAF1 16848 94 - 1
UGCACAUGCAAAAAGGCAGCAGCAGCAACAAAAACAACAACAAGAACUCCGUCUGAGAGUUUUAAAGCCGAAGUUCUCGACGCAGACGUCGGCG
(((...(((......)))...)))((................((((((.((.((...........)).)).))))))(((((....))))))). ( -21.80)
>DroEre_CAF1 16588 94 - 1
UGCACAUGCAAAAAGGCAGCAGCAGCAACAAGAACAACAACAUAAACUCCGUCUGAGAGCUUCAAAGCCGAAGUUCUCGACGCAGACGUCGGCG
(((...(((......)))...))).........................((((.(((((((((......)))))))))((((....)))))))) ( -27.00)
>DroYak_CAF1 17631 91 - 1
UGCACAUGCAAAAAGGCAGCAGCAGCA---AAAACAACAACAUUAACUCCGUCUGAGAGCUUUAAAGCCGAAGUUCUCGACGCAGACGUCGGCG
(((...(((......)))...)))...---...................((((.(((((((((......)))))))))((((....)))))))) ( -24.70)
>DroAna_CAF1 13412 85 - 1
UGCACAUGCAAAAAGGCGGCUGCAACAACAAAAAC---------AACUCCGCUUGAGAGCUUUCAAGCCGAAGUUCUUGACGUUGGCGUUGUCG
((((..(((......)))..)))).........((---------(((.(((((..((((((((......))))))))..).).))).))))).. ( -25.00)
>consensus
UGCACAUGCAAAAAGGCAGCAGCAGCAACAAAAACAACAACAAAAACUCCGUCUGAGAGCUUUAAAGCCGAAGUUCUCGACGCAGACGUCGGCG
(((...(((......)))...))).........................((((.(((((((((......)))))))))((((....)))))))) (-22.33 = -21.83 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:56 2006