| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,066,470 – 18,066,574 |
| Length | 104 |
| Max. P | 0.570656 |
| Location | 18,066,470 – 18,066,574 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 83.88 |
| Mean single sequence MFE | -17.42 |
| Consensus MFE | -10.82 |
| Energy contribution | -12.04 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.65 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.570656 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18066470 104 + 23771897 AAAAAAAAAGACGAGAGCAGUGCACUUAAAUAGCUGCAUAAAUUUCAAUUAAAAUGCAGCGAAAUAAGAAAAAUAACAACAAGACUUA-AAACGCUAAUUCGUAG ..........((((.(((......((((....(((((((..............)))))))....))))........(.....).....-....)))...)))).. ( -16.84) >DroSec_CAF1 11988 97 + 1 -------AAAACGAGAGCAGUGCACUUAAAUAGCUGCAUAAAUUUCAAUUAAAAUGCAGCGAAAUAAGAAAAAUAACAACUAGACUUA-AAACGCUAAUUCGUAG -------...((((.(((......((((....(((((((..............)))))))....))))........(.....).....-....)))...)))).. ( -16.74) >DroSim_CAF1 12400 103 + 1 -AAAAAAAAAACGAGAGCAGUGCACUUAAAUAGCUGCAUAAAUUUCAAUUAAAAUGCAGCGAAAUAAAAAAAAUAACAACAAGACUUA-AAACGCUAAUUCGUAG -.........((((.(((((....))......(((((((..............)))))))............................-....)))...)))).. ( -15.44) >DroEre_CAF1 12033 95 + 1 ---------AACGAGAGCACUGCACUUAAAUAGCUGCAUAAAUUUCAAUUAAAAUGCAGCGAAAUAAGAAAAGUAACAACAAGACUUA-UAUCGCUAAUUCGUGG ---------.((((.(((..............(((((((..............)))))))((.(((((....((....))....))))-).)))))...)))).. ( -20.04) >DroYak_CAF1 12895 95 + 1 ---------AACGAGAGCAGCGCACUUAAAUAGCUGCAUAAAUUUCAAUUAAAAUGCAGCGAAAUAAGAAAAAUAACAACCAGACUUA-UGCCGCUAAUUUGUAG ---------.((((.(((.((...........(((((((..............)))))))...(((((................))))-))).)))...)))).. ( -17.73) >DroAna_CAF1 10094 103 + 1 --UAAAAAAAACAGAAUGAGUGCACUUAAAUAGCUGCAUAAAUUUCAAUUAAAAUGCAGCAAAAUAAGAAAAAUAACAACAUAAUAUGAGAGAGCUUGAGCUCUG --..............((((....))))....(((((((..............)))))))..............................(((((....))))). ( -17.74) >consensus _______AAAACGAGAGCAGUGCACUUAAAUAGCUGCAUAAAUUUCAAUUAAAAUGCAGCGAAAUAAGAAAAAUAACAACAAGACUUA_AAACGCUAAUUCGUAG ..........((((.(((......((((....(((((((..............)))))))....))))........(.....)..........)))...)))).. (-10.82 = -12.04 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:55 2006