| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,056,336 – 18,056,432 |
| Length | 96 |
| Max. P | 0.806274 |
| Location | 18,056,336 – 18,056,432 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 83.37 |
| Mean single sequence MFE | -21.08 |
| Consensus MFE | -16.86 |
| Energy contribution | -16.37 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.806274 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18056336 96 - 23771897 ---GGUAGCUAUAGAUACUCGAGAAAUAUUUUAUAAA-AGCAUUUUAAUUACAUGUAAGAGGAAUUCAGCUUACUGCUGAAAUCCGCUUACAGAAAGCAA ---....(((............(((((.(((.....)-)).))))).......((((((.(((.((((((.....)))))).))).))))))...))).. ( -23.10) >DroSec_CAF1 1955 96 - 1 ---GGCAGCUAUAGAUACUCGAGAAAUAUUUUAUAAA-AGCAUUUUAAUUGCAUGUAAGAGGAAUUCAGCUUACUGCUGAAAUCCGCUUACAGAACGCAA ---.((...............................-.(((.......))).((((((.(((.((((((.....)))))).))).))))))....)).. ( -25.70) >DroSim_CAF1 2198 96 - 1 ---GGUAGCUAUAGAUACUCGAGAAAUAUUUUAUAAA-AGCAUUUUAAUUACAUGUAAGAGGAAUUCAGCUUACUGCUGAAAUCCGCUUACAGAAAGCAA ---....(((............(((((.(((.....)-)).))))).......((((((.(((.((((((.....)))))).))).))))))...))).. ( -23.10) >DroEre_CAF1 2015 97 - 1 --GGAUAGAUAUAGAUACUCGAGAAAAAAUGUAUAAA-AGCAUUUUAAUCACAUGUAAGAGGAAUUUGGUUUGCUGCUGAAAUCGGCUUACAGAAAACCA --((................((...(((((((.....-.)))))))..))...((((((..((.((..((.....))..)).))..)))))).....)). ( -19.50) >DroYak_CAF1 1920 97 - 1 --UGGUAGAUAUAGAUACUCGAGAAAAAUUGUAUAAU-AGCAUUUUAAUCACAUGUAAGAGGAAUUUGGUUUGCUGCUGAAAUCGGCUUACGGAAAACAA --.((((........)))).((..(((((.((.....-.)))))))..))...((((((..((.((..((.....))..)).))..))))))........ ( -15.00) >DroAna_CAF1 1766 98 - 1 AGUAACAGAUACAGAUGCUUGGGAAAUAUUUCAUAAAUUGCCAUUUAAUUACAUGUAAGAGGAAAUCGGUUUAUGACUGAAAUCCGCUUACAUCAAGA-- .((((.((((...(((...((..(....)..))...)))...))))..))))(((((((.(((..((((((...))))))..))).))))))).....-- ( -20.10) >consensus ___GGUAGAUAUAGAUACUCGAGAAAUAUUUUAUAAA_AGCAUUUUAAUUACAUGUAAGAGGAAUUCAGCUUACUGCUGAAAUCCGCUUACAGAAAGCAA .....................................................((((((.(((.((((((.....)))))).))).))))))........ (-16.86 = -16.37 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:52 2006