| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,002,627 – 2,002,718 |
| Length | 91 |
| Max. P | 0.833617 |
| Location | 2,002,627 – 2,002,718 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 94.58 |
| Mean single sequence MFE | -27.10 |
| Consensus MFE | -23.91 |
| Energy contribution | -24.43 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.833617 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2002627 91 + 23771897 GUGUCCCCACCCGAUGUGCAUUAAUUAUGCAUGUCAGAAGUCAAGGCGGCUGAAACGCUCAGCUGACAGCUGUCACCGCAGACAAUCAAGC (((....)))..(((((((((.....)))))))))....(((...((((((((.....)))))((((....)))).))).)))........ ( -28.10) >DroSec_CAF1 53326 91 + 1 GUGUCCCCACCCGAUGUGCAUUAAUUAUGCAUGUCAGAAGUCAAUGCGGCUGAAACGCUUAGCUGACAGCUGUCACCGCAGACAAUCAAGC .((((.......(((((((((.....))))))))).........(((((.(((...(((........)))..))))))))))))....... ( -27.20) >DroSim_CAF1 68347 91 + 1 GUGUCCCCACCCGAUGUGCAUUAAUUAUGCAUGUCAGAAGUCAAGGCGGCUGAAACGCUCAGCUGACAGCUGUCACCGCAGACAAUCAAGC (((....)))..(((((((((.....)))))))))....(((...((((((((.....)))))((((....)))).))).)))........ ( -28.10) >DroEre_CAF1 59305 91 + 1 GUGGCCCCACCCGAUGUGCAUUAAUUAUGCAUGUCAGAAGUCAAGGCGGCUGAAACGCUCAGCUGACAGCUGUCACCGCAGACAAUCAACC (((....)))..(((((((((.....)))))))))....(((...((((((((.....)))))((((....)))).))).)))........ ( -30.00) >DroYak_CAF1 54554 91 + 1 GUGUCCCCACCCGAUGUGCAUUAAUUAUGCAUGUCAGAAGUCAAGGCGGCUGAAACGCUCAGCUGACAGCUGUCACCGCAGACAAUCAGCC (((....)))..(((((((((.....)))))))))....(((...((((((((.....)))))((((....)))).))).)))........ ( -28.10) >DroAna_CAF1 51905 89 + 1 CGAUCCCCA-CCGAUGAGCAUUAAUUAUGCAUGCCAGAAGUCAAGGCGGCUGAGACGC-CAACUGACAGCUGUCACCGCAGACAAUCAACC .(((.....-.((.(((((((.....))))....(((..((((.((((.......)))-)...))))..)))))).))......))).... ( -21.10) >consensus GUGUCCCCACCCGAUGUGCAUUAAUUAUGCAUGUCAGAAGUCAAGGCGGCUGAAACGCUCAGCUGACAGCUGUCACCGCAGACAAUCAACC ............(((((((((.....)))))))))....(((...((((((((.....)))))((((....)))).))).)))........ (-23.91 = -24.43 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:12 2006