| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,055,339 – 18,055,448 |
| Length | 109 |
| Max. P | 0.874890 |
| Location | 18,055,339 – 18,055,448 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.44 |
| Mean single sequence MFE | -32.98 |
| Consensus MFE | -25.89 |
| Energy contribution | -27.12 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.874890 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18055339 109 - 23771897 ---UUUA-UU-------UUUUCAGAUGCGGUUUUUGUCAGUGGACUCUUGGCCAUUGGCAGCUCAGCUGUGCUGGGCAUCUUCUGCAUUCUGUCGGUCAUUCAACACGCGAUGAUCUCAU ---....-..-------....(((((((((....(((((((((.(....).)))))))))(((((((...))))))).....))))).))))..(((((((........))))))).... ( -38.40) >DroVir_CAF1 770 106 - 1 ---UUCU-A----------UUCAGAUGCGGUUUUUGUCAGCGGACUCUUGGCAGUUGGCAGCUCAGCGGUGCUGGGCAUCUUUUGCAUAUUGUCAGUCAUUCAACACGCGAUGAUAUCGU ---....-.----------.......(((((..(..((.((((((.....((((..((..(((((((...))))))).))..)))).....))).((......)).)))))..).))))) ( -29.30) >DroGri_CAF1 768 107 - 1 ---UCCUUU----------UACAGAUGCCGUCUUUGUCAGCGGACUCUUGGCCAUUGGCAGCUCAGCGGUGCUGGGCAUCUUUUGCAUAUUGUCCGUCAUUCAGCACGCGAUGAUCUCGU ---......----------.((((((.((((((..((..((((((...(((((...))).(((((((...)))))))........))....)))))).))..)).))).)...)))).)) ( -27.40) >DroWil_CAF1 2984 109 - 1 CCUUUUU-U----------UCCAGAUGUAGUCUUUAUCAGUGGCCUAUUGGCCAUUGGCAGCUCAGCUGUGCUGGGCGUAUUUUGCAUACUCUCGGUCAUUCAACAUGCAAUGAUCUCAU .......-.----------.....((((((......(((((((((....)))))))))..(((((((...))))))).....))))))......((((((((.....).))))))).... ( -34.50) >DroMoj_CAF1 843 106 - 1 ---UUUG-U----------UUCAGAUGCAGUAUUUGUCAGCGGACUCUUGGCAGUGUUCAGCUGUGCUGUGCUGGGCAUCUUCUGCAUUAUGUCGGUGAUUCAGCACGCGAUGAUCUCGU ---....-.----------....(((((((....((((((.......))))))(((((((((........)))))))))...)))))))..(((((((......))).))))........ ( -30.50) >DroAna_CAF1 760 116 - 1 ---UUUA-UUUAAACCCUUUUCAGAUGCAGUCUUUGUUAGUGGUCUGCUGGCCAUUGGCAGCUCAGCUGUGCUGGGCAUCUUUUGCAUUUUGUCGGUCAUUCAACAUGCGAUGAUCUCAU ---....-..............((((((((....(((((((((((....)))))))))))(((((((...))))))).....))))))))....(((((((........))))))).... ( -37.80) >consensus ___UUUU_U__________UUCAGAUGCAGUCUUUGUCAGCGGACUCUUGGCCAUUGGCAGCUCAGCUGUGCUGGGCAUCUUUUGCAUAUUGUCGGUCAUUCAACACGCGAUGAUCUCAU .....................(((((((((....(((((((((........)))))))))(((((((...))))))).....)))))).)))..(((((((........))))))).... (-25.89 = -27.12 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:51 2006