Locus 6735

Sequence ID 3L_DroMel_CAF1
Location 18,038,798 – 18,038,918
Length 120
Max. P 0.524295
window10950

overview

Window 0

Location 18,038,798 – 18,038,918
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 95.56
Mean single sequence MFE -31.37
Consensus MFE -27.81
Energy contribution -27.70
Covariance contribution -0.11
Combinations/Pair 1.05
Mean z-score -1.77
Structure conservation index 0.89
SVM decision value -0.02
SVM RNA-class probability 0.524295
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18038798 120 - 23771897
GUGGUUAUCAAAUGAAUCGUUUUUGUUGGUAAUACAAGAAUGUGGCCACACAACUGAGGAAUUAGUUUUCGAUAGAAGUUGUGACUUUUGGAACGAUAUUCUAAUCGAAGCGGUUACCAA
(((((((((....))..(((((((((.......))))))))))))))))........((((((.((((.(((((((((((((..(....)..))))).)))).)))))))))))).)).. ( -30.60)
>DroSec_CAF1 153055 120 - 1
GUGGUUUUCAGAUGAAUCGUUUUUGUUGAUAAUACAAGAAUGUGGGCACACAACUGAGGAAUUAGUUUUCGAUAGAAGUUGUGACUUCUGGAACGAUAUUCUAAUCGAAGCGGUUACCAA
.((((..((........(((((((((.......)))))))))...((....((((((....))))))(((((((((((((((..(....)..))))).)))).))))))))))..)))). ( -30.90)
>DroSim_CAF1 164593 120 - 1
GUGGUUUUCAGAUGAAUCAUUUUUGUUGAUAAUACGAGAAUGUGGGCACACAACUGAGGAAUUAGUUUUCGAUAGAAGUUGUGCCUUCUGGAACGAUAUUCUAAUCGAAGCGGUUACCAA
.(((((((((((.....(((((((((.......))))))))).((((((((((((((....))))))(((....)))).))))))))))))))((((......))))........)))). ( -32.60)
>consensus
GUGGUUUUCAGAUGAAUCGUUUUUGUUGAUAAUACAAGAAUGUGGGCACACAACUGAGGAAUUAGUUUUCGAUAGAAGUUGUGACUUCUGGAACGAUAUUCUAAUCGAAGCGGUUACCAA
.((((..((........(((((((((.......)))))))))...((....((((((....))))))(((((((((((((((..(....)..))))).)))).))))))))))..)))). (-27.81 = -27.70 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:42 2006