Locus 6733

Sequence ID 3L_DroMel_CAF1
Location 18,011,378 – 18,011,496
Length 118
Max. P 0.521200
window10948

overview

Window 8

Location 18,011,378 – 18,011,496
Length 118
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 90.19
Mean single sequence MFE -29.08
Consensus MFE -23.46
Energy contribution -24.82
Covariance contribution 1.36
Combinations/Pair 1.03
Mean z-score -1.35
Structure conservation index 0.81
SVM decision value -0.02
SVM RNA-class probability 0.521200
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18011378 118 + 23771897
AUUCAUUAGCCAAGCAAAUGCAGCUAUUCAAAAGUUGAUGUAGAACUUGUUGUCAGUAGGAGGUGGUUUACCGCAAUGUUUGAACUGGCACUUUGGAUAACUGUUUGCAUAACACUAU
.............((((..((((.((((((((((((.......)))))..(((((((.(((.((((....))))....)))..)))))))..))))))).)))))))).......... ( -28.20)
>DroSec_CAF1 134600 115 + 1
AUUCAUUAGCCAAGCAACUGCAGUUAUUCAAAAGUUGCUAUAGAACUUGUUGUCAGUAG---GUGGUUUACCGCAAUGUUUGAACUGGCACUUUGGACAACUGUUUGCAUAACACUAU
........((..(((((((.............)))))))...((((..((((((...((---((((....))))..((((......))))))...)))))).)))))).......... ( -27.32)
>DroSim_CAF1 145485 115 + 1
AUUCAUUAGCCAAGCAACUGCAGUUAUUCAAAACUUGGUAUAGAACUUGUUGUCAGUAG---GUGGUUUACCGCAAUGUUUGAACUGGCACUUUGGACAACUGUUUGCAUAACACUAU
.............((((..((((((.((((((((..(((.....))).)))((((((..---((((....)))).........))))))...))))).)))))))))).......... ( -25.50)
>DroEre_CAF1 136322 115 + 1
ACUCAUUAGCCGAGCAAAAGCAGUUAUUCAAAGGUUAGUAUAGAACUUGUUGUCAGUAG---GUGGUUUACCGCAAUGUUUGAACUGGCACUUUGGAUAACUGUUUGCAUAACGCCAU
.............((((..((((((((((((((((((((...(((((((....)))...---((((....))))...))))..)))))).)))))))))))))))))).......... ( -35.70)
>DroYak_CAF1 141549 113 + 1
--UCAUUAGCCAGGCAAAAGCACUUAUUCAAAGGCUGGUAUAGAACUAGUUGUCAGCAG---GUGGUCUACCGCAAUGUUUGAACUGCCACUUUGGAUAACUGUUUGCAUAACACUGU
--...........((((..(((.((((((((((((((((.....))))))..((((((.---((((....))))..)).)))).......)))))))))).))))))).......... ( -28.70)
>consensus
AUUCAUUAGCCAAGCAAAUGCAGUUAUUCAAAAGUUGGUAUAGAACUUGUUGUCAGUAG___GUGGUUUACCGCAAUGUUUGAACUGGCACUUUGGAUAACUGUUUGCAUAACACUAU
.............((((..(((((((((((((((((.......))))...(((((((.....((((....)))).........))))))).))))))))))))))))).......... (-23.46 = -24.82 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:40 2006