Locus 6732

Sequence ID 3L_DroMel_CAF1
Location 18,005,721 – 18,005,841
Length 120
Max. P 0.723457
window10947

overview

Window 7

Location 18,005,721 – 18,005,841
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.33
Mean single sequence MFE -28.74
Consensus MFE -21.74
Energy contribution -22.10
Covariance contribution 0.36
Combinations/Pair 1.19
Mean z-score -1.77
Structure conservation index 0.76
SVM decision value 0.41
SVM RNA-class probability 0.723457
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18005721 120 + 23771897
CGACUUUCUAUGCAUUUUUCUGCAUGGGAGCAGGAUUCUUUAUGUUUAGCUUCUCGCUGCACAAUGUAAUUAUAUCAGAAGAGUCUAUUACCAUUAUGGAUUGGUUUCUGCACAUACAUG
.....(((((((((......)))))))))((((((((((((.(((.((((.....)))).)))((((....))))..))))))))....((((........))))..))))......... ( -31.20)
>DroSec_CAF1 129054 120 + 1
CGAUUUUCUAUGCAUUUUUCUGCAUGGGAGCAGGAUUCUUUAUGUUUAGCUUCUCGCUGCACAAUGUAAUUAUAUCAGAAGAAUCUAUUACCAUUAUGGAUUGGUUUUUGCACAUACAUG
.....(((((((((......)))))))))((((((((((((.(((.((((.....)))).)))((((....))))..)))))))))...((((........))))...)))......... ( -29.60)
>DroSim_CAF1 139905 120 + 1
CGAUUUUCUAUGCAUUUUUCUGCAUGGGAGCAGGAUUCUUUAUGUUUAGCUUCUCACUGCACAAUGUAAUUAUAUCAAAAUAAUCUAUUACCAUUAUGGAUUGGUUUUUGCACAUACAUG
.....(((((((((......)))))))))(((((((...(((((((..((........))..)))))))....)))....((((((((.......))))))))....))))......... ( -24.30)
>DroEre_CAF1 131014 120 + 1
CGAUUUUCUAUGCAUUUUUCUGCUUGGGAGCAGGUUUAUUUGCGUUUAGCUUUUCGCUGCACAAUGUAAUCAUAUUGGAACAAUCUAUUACACUUAUGGAUUGGUUUAUGCAUUUACAUG
...........(((..(.((((((....))))))...)..)))((.((((.....)))).)).((((((.((((......((((((((.......))))))))...))))...)))))). ( -27.50)
>DroYak_CAF1 135818 120 + 1
CGAUGUUCUAUGCAUUUUUCUGCAUGGGAGUUGGUUUAUUUACGGGUAGCUUUGCGAUGCACAAUGUAAUCGUAUCGGAACAGUCUAUUACACUUAUGGAUUGGUUUCUGCAUAUGCAUG
((((.(((((((((......)))))))))))))...............((..((((((((...........)))))((((((((((((.......))))))).))))).)))...))... ( -31.10)
>consensus
CGAUUUUCUAUGCAUUUUUCUGCAUGGGAGCAGGAUUCUUUAUGUUUAGCUUCUCGCUGCACAAUGUAAUUAUAUCAGAACAAUCUAUUACCAUUAUGGAUUGGUUUCUGCACAUACAUG
.....(((((((((......)))))))))(((((.....(((((((..((........))..)))))))...........((((((((.......))))))))...)))))......... (-21.74 = -22.10 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:39 2006