Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,004,749 – 18,004,869 |
Length | 120 |
Max. P | 0.557802 |
Location | 18,004,749 – 18,004,869 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.67 |
Mean single sequence MFE | -26.40 |
Consensus MFE | -21.67 |
Energy contribution | -22.05 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.14 |
Mean z-score | -1.49 |
Structure conservation index | 0.82 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557802 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18004749 120 + 23771897 AAAAAUACAAACAUCGAGCUGGGCGAAGUUCUAUUCUAUAUGGUGUAUACUAAUAGGUACCUUGGGAAUUGGAUACUCGAUUUAUUUUAUAAUCGAUAUAGACAAAUAUAUCCAAAUUGU ......((((.....(((((......)))))..(((((...((((..((....))..)))).))))).(((((((.((((((........))))))(((......)))))))))).)))) ( -21.40) >DroSec_CAF1 127973 120 + 1 AAAAAUACAAACAUCGAGCUGGGCGAAGUUCUAUUCUAUAUGGUGCAUACUAAUAGGUACCUUGGGAAUUGGAUACUCGCUGUAUUUUAUAAUUGAUAUAGACAAAUAUAUCAAAAUUGU .(((((((...((......))(((((.((((.(((((....(((((..........)))))...))))).))))..))))))))))))....((((((((......))))))))...... ( -29.30) >DroSim_CAF1 138829 120 + 1 AAAAAUUCAAACAUCGAGCUGGGCGAAGUUCUAUUCUAUAUGGUGCAUACUAAUAGGUACUUUGGGAAUUGGAUACUCGAUGUAUUUUAUAAUUGAUAUAGACAAAUAUAUCAAAAUUGU ..........(((((((((..(.((((((((((((...((((...))))..)))))).))))))....)..)...)))))))).........((((((((......))))))))...... ( -26.50) >DroEre_CAF1 129864 120 + 1 GAGCAUACCAACAUUGAGCUGGGCGAAGUUCUAUUCCAUAUGGUGCAUACUUAUAGGUACCUUGGGUAUCGGAUACUCGAUGUAUUUUAUAAUUGAUAUAGACGAGUAUAUAAAAAUGGU ...(((.((......(((((......)))))...((((...(((((..........))))).))))....))(((((((.((((((........))))))..)))))))......))).. ( -28.40) >consensus AAAAAUACAAACAUCGAGCUGGGCGAAGUUCUAUUCUAUAUGGUGCAUACUAAUAGGUACCUUGGGAAUUGGAUACUCGAUGUAUUUUAUAAUUGAUAUAGACAAAUAUAUCAAAAUUGU ......((((((((((((((......)).((((((((....(((((..........)))))...))))).)))..)))))))).........((((((((......))))))))..)))) (-21.67 = -22.05 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:38 2006