Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,002,454 – 18,002,549 |
Length | 95 |
Max. P | 0.749886 |
Location | 18,002,454 – 18,002,549 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 73.47 |
Mean single sequence MFE | -23.60 |
Consensus MFE | -6.83 |
Energy contribution | -7.88 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.08 |
Mean z-score | -2.35 |
Structure conservation index | 0.29 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.749886 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18002454 95 - 23771897 CCUUCGAUCGCUUCUGUUGCCCCAAAACUUCCA-------ACAACUAGC-UGCGAUUCGAAUCGCGGCUGUACUCGAAUCU--------------GCAAUCUGCAUUCCCUUCAAUA ..(((((..((...(((((............))-------)))...(((-((((((....)))))))))))..)))))..(--------------((.....)))............ ( -21.90) >DroPse_CAF1 131938 85 - 1 CUCCCCCCCACCUCUAUGGAG--GGAACUCUCU----GC-CCAACUCGAACGCGAAUCG---CGCGGCUGUACUCC--------------------CCAUCUGCAUGGCAG--GGCC ...(((.(((......))).)--))....((((----((-(..........(((...))---)((((.((......--------------------.)).))))..)))))--)).. ( -26.10) >DroSec_CAF1 125651 98 - 1 CCCUCGAUCACUUCUGUUGCCCCAAAACUUCCA----ACAACAACUAGC-AGCGAUUCGAAUCGCGGCUGUACUCGAAUCU--------------GCAAUCUGCAUUCCCUUCAAUA ...((((.......(((((..............----.)))))..((((-.(((((....))))).))))...))))...(--------------((.....)))............ ( -17.26) >DroSim_CAF1 136475 98 - 1 CCUUCGAUCGCUUCUGUUGCCCCAAAACUUCCA----GCAACAACUAGC-UGCGAUUCGAAUCGCGGCUGUACUCGAAUCU--------------GCAAUCUGCAUUCCCUUCAAUA ..(((((..((...((((((.............----))))))...(((-((((((....)))))))))))..)))))..(--------------((.....)))............ ( -25.52) >DroEre_CAF1 127543 95 - 1 CCUCCGAUCGCUUCCAUUGCCCCAAAACUG-------GCAACAACUAGC-UGCGAUUCGAAUCGCGGCUGUACUCGAAUCU--------------GCAAUCUGCAUUCCCUUCAAUA .....(((.((.....(((((........)-------))))....((((-((((((....))))))))))...........--------------)).)))................ ( -23.30) >DroYak_CAF1 133211 116 - 1 CCUUCGAUCGCCUCUGCCACCCCGAAACUUGCAACUUGCAACAACUAGC-UGCGAUUCGCUUCGCGGCUGUACUCGAAUCUGCAAACUGCAAUCUGCAAUCUGCAUUCCCUUCCAUA ..((((...((....)).....))))...((((..(((((.....((((-(((((......)))))))))..........(((.....)))...)))))..))))............ ( -27.50) >consensus CCUUCGAUCGCUUCUGUUGCCCCAAAACUUCCA____GCAACAACUAGC_UGCGAUUCGAAUCGCGGCUGUACUCGAAUCU______________GCAAUCUGCAUUCCCUUCAAUA .............................................((((.((((((....)))))))))).........................((.....))............. ( -6.83 = -7.88 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:37 2006