| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,999,313 – 17,999,414 |
| Length | 101 |
| Max. P | 0.584807 |
| Location | 17,999,313 – 17,999,414 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 72.35 |
| Mean single sequence MFE | -25.24 |
| Consensus MFE | -12.02 |
| Energy contribution | -12.18 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.584807 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17999313 101 - 23771897 AAACAGCCACUAAAAUGCGAUGGGAGAGCGAAAGAUAGGGAACUAUUGGAU--GGGAACU------AGUGGGAG---GAGGGAGGCUGGCCUUGCCUGAGGUCUUGUGUAAG ..(((.((((((..((.((((((.....(....)........)))))).))--(....))------)))))(((---(....((((.......))))....)))).)))... ( -23.32) >DroSec_CAF1 122294 98 - 1 AAACAGCCACAAAAAGGGGCUGGAAGAGCGAAAGAUAGGGAACUAAGGGGU--GGGC---------AGUGGGAG---GAGGAAGGCUGGCCUUGCCUGAGGUCUUGUGUAAG ...(((((.(......)))))).....(((.(((((.(((......(((((--.(((---------..(.....---....)..))).))))).)))...))))).)))... ( -26.80) >DroSim_CAF1 131222 98 - 1 AAACAGCCACAAAAAGGGGCUGGGAGAGCGAAAGAUAGGGAACUAAUGGGU--GGGC---------AGUGGGAG---GAGGGAGGCUGGCCUUGCCUGAGGUCUUGUGUAAG ...(((((.(......)))))).((((.(......(((....)))..((((--((.(---------(((.....---.......)))).))..))))..).))))....... ( -25.90) >DroYak_CAF1 129924 81 - 1 AAACAGCCGCAAAA------------------AGAUAGGGAACUAUUGGGUGGGGG---------CGGUGGGAG---GAG-GAGGCUGGCCUUGCCUGAGGUCUUGUGUAAG ..((((((......------------------.(((((....)))))(((..(((.---------((((.....---...-...)))).)))..)))..)))..)))..... ( -25.60) >DroAna_CAF1 114414 97 - 1 AAAUAACCACACAAUAGGGCGU----------AGAAAGGGGCCUAG---AU--AGGGUCUAAGGCGAGUGAGAGAGUGAGAAAGAGUGGCCUUGCCUGGGGUCUUGUGUAAG ........((((....((((.(----------......).))))..---..--(((..((.(((((((.(...(..(......)..)..)))))))).))..)))))))... ( -24.60) >consensus AAACAGCCACAAAAAGGGGCUGG_AGAGCGAAAGAUAGGGAACUAAUGGGU__GGGC_________AGUGGGAG___GAGGGAGGCUGGCCUUGCCUGAGGUCUUGUGUAAG ..((((((((..................(....).(((....)))......................))))................((((((....))))))))))..... (-12.02 = -12.18 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:36 2006