Locus 6727

Sequence ID 3L_DroMel_CAF1
Location 17,992,151 – 17,992,262
Length 111
Max. P 0.526507
window10941

overview

Window 1

Location 17,992,151 – 17,992,262
Length 111
Sequences 3
Columns 111
Reading direction reverse
Mean pairwise identity 97.60
Mean single sequence MFE -32.80
Consensus MFE -30.33
Energy contribution -30.67
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.92
SVM decision value -0.01
SVM RNA-class probability 0.526507
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17992151 111 - 23771897
UUUUAAUUGGUGUCCCUUUGAAGGAGCAAGUUUUGUUUCAGGCAUUUGUGCUGCGGCUCUCAGGAAACUUUUUGAGUGGUUUCUGCUGUAGCCCUAGUUGCCUUUGUUGCC
........(((...........((((((.....))))))(((((...(.((((((((.....(((((((........))))))))))))))).)....))))).....))) ( -31.70)
>DroSec_CAF1 115636 111 - 1
UUUUAAUUGGGGUCCCUUUGAAGGCGCAAGUUUGGUUUCAGGCAUUUGUGCUGCGGCUCUCAGGAAACUUUUUUAGUGGUUUCUGCUGUAGCCCUAGUUGCCUUUGUUGCC
..((((..((....)).))))((((....))))(((..((((((...(.((((((((.....(((((((........))))))))))))))).)....))))..))..))) ( -33.80)
>DroSim_CAF1 124332 111 - 1
UUUUAAUUGGGGUCCCUUUGAAGGCGCAAGUUUUGUUUCAGGCAUUUGUGCUGCGGCUCUCAGGAAACUUUUUGAGUGGUUUCUGCUGUAGCCCUAGUUGCCUUUGUUGCC
...((((((((((..(...((((((((((((((((...)))).)))))))))((.((((..((....))....)))).)))))....)..))))))))))........... ( -32.90)
>consensus
UUUUAAUUGGGGUCCCUUUGAAGGCGCAAGUUUUGUUUCAGGCAUUUGUGCUGCGGCUCUCAGGAAACUUUUUGAGUGGUUUCUGCUGUAGCCCUAGUUGCCUUUGUUGCC
.(((((..((....)).)))))(((((((..........(((((...(.((((((((.....(((((((........))))))))))))))).)....)))))))).)))) (-30.33 = -30.67 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:33 2006