Locus 6726

Sequence ID 3L_DroMel_CAF1
Location 17,982,851 – 17,982,942
Length 91
Max. P 0.992331
window10940

overview

Window 0

Location 17,982,851 – 17,982,942
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 87.56
Mean single sequence MFE -15.63
Consensus MFE -13.37
Energy contribution -13.17
Covariance contribution -0.20
Combinations/Pair 1.23
Mean z-score -2.34
Structure conservation index 0.86
SVM decision value 2.32
SVM RNA-class probability 0.992331
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17982851 91 + 23771897
UUUUUUCAGUUUCGGUUACUUCAAUCCAUUACUGAUAGCAUCUCUGUUCUCCAGAAAAUAAGAAGUAACACUUGAAAACUAUAUAAAUACC
..(((((((.....((((((((.(((.......)))......((((.....))))......))))))))..)))))))............. ( -15.30)
>DroSec_CAF1 106287 89 + 1
UUUUUUCAGU-UCGGUUACUUC-AUCCAUUACUGAUAGCAUCUCUGCUCUCCAGAAAAUUAGAAGUAACACUUGAAAACUACAUAAAUAAC
..(((((((.-...((((((((-........(((..((((....))))...))).......))))))))..)))))))............. ( -17.46)
>DroSim_CAF1 113635 90 + 1
UUUUUUCAGU-UCGGUUACUUCAAUCCAUUACUGAUAGCAUCUCUGCUCUCCAGAAAAUAAGAAGUAACACUUGAAAACUACAUAAAUAAC
..(((((((.-...((((((((.........(((..((((....))))...))).......))))))))..)))))))............. ( -16.89)
>DroEre_CAF1 107709 86 + 1
CUUUUUCAGU-UUGGUUACUUCAUGUCAUUACCGAUAUCAUCUCUGCUCUCCGGAAAAUAAAAAGUAACACUUGAGAACU----AAAUAAC
..(((((((.-...(((((((.(((((......)))))....((((.....)))).......)))))))..)))))))..----....... ( -13.70)
>DroYak_CAF1 112506 86 + 1
UUUUUUCAGU-UUGGUUACUUUAUGCCAUUACUGAUAGCAUCUCUGCUCUCCGAAAAAUUAGAAGUAACACUUGAAAACU----AAGCAAC
..(((((((.-...((((((((...........((.((((....)))).))..........))))))))..)))))))..----....... ( -14.80)
>consensus
UUUUUUCAGU_UCGGUUACUUCAAUCCAUUACUGAUAGCAUCUCUGCUCUCCAGAAAAUAAGAAGUAACACUUGAAAACUA_AUAAAUAAC
..(((((((.....((((((((.........(((..((((....))))...))).......))))))))..)))))))............. (-13.37 = -13.17 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:32 2006