Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,972,565 – 17,972,658 |
Length | 93 |
Max. P | 0.832238 |
Location | 17,972,565 – 17,972,658 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 84.09 |
Mean single sequence MFE | -25.82 |
Consensus MFE | -18.95 |
Energy contribution | -19.05 |
Covariance contribution | 0.10 |
Combinations/Pair | 1.10 |
Mean z-score | -2.95 |
Structure conservation index | 0.73 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.832238 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17972565 93 + 23771897 AGGCUGGCAGCUGCCGC----AGACCAUGGCAUAAAAACAGCACACACCGAUUGAUAUCUCAGUCGGUAAUAAGUGCAGAAAAGCCAUAAAAAUAAC .(((((((....)))((----........)).........((((..(((((((((....))))))))).....)))).....))))........... ( -28.70) >DroSim_CAF1 103532 93 + 1 AGGCUGGCAGCUGCCGC----AGACCAUGGCAUAAAAACAGCACACACAGAUUGAUAUCUCAGUCGGUAAUAAGUGCAGAAAAGCCAUAAAAAUAAU .((((.....(((((..----..(((.((((.........)).))....((((((....))))))))).....).))))...))))........... ( -23.40) >DroEre_CAF1 97449 93 + 1 AGGCUGGCAGCUGCCGC----AGACCGUGGCAUAAAAACAGCGCACAGCGAUUGAUAUCUCAGUCGGUAAUAAGUGCAGAAAAGCCAUAAAAAUAAC .((((..(...((((((----.....))))))..........(((((.(((((((....))))))).).....)))).)...))))........... ( -28.20) >DroWil_CAF1 137905 93 + 1 AGGCUGACAGCUGCCGGACGGAGGCC---GCAUCCGAAA-GCCAAAUAAGAUUGAUAUCUCGGGCGGUAAUAAGUGCAGAAAAGCCAUAAAAAUAAC .((((.....(((((((((((...))---)..))))...-(((.....((((....))))..)))..........))))...))))........... ( -25.00) >DroYak_CAF1 101741 93 + 1 AGGCUGGCAGCUGCCGC----AGACCGUGGCAUAAAAACAGCGCACACAGAUUGAUAUCUCAGUCGGUAAUAAGUGCAGAAAAGCCAUAAAAAUAAC .((((.....(((((..----..((((((((.........)).)))...((((((....))))))))).....).))))...))))........... ( -27.30) >DroAna_CAF1 91001 82 + 1 AGGCUGACAGCUGCCUC----CUACCAGGC-----------CUCUCUCAGAUUGAUAUCUCAGUCGGUAAUAAGUGCAGAAAAGCCAUAAAAAUAAC .((((.....((((((.----.((((.((.-----------.....)).((((((....))))))))))...)).))))...))))........... ( -22.30) >consensus AGGCUGGCAGCUGCCGC____AGACCAUGGCAUAAAAACAGCACACACAGAUUGAUAUCUCAGUCGGUAAUAAGUGCAGAAAAGCCAUAAAAAUAAC .((((.....(((((........(((...((.........)).......((((((....))))))))).....).))))...))))........... (-18.95 = -19.05 + 0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:30 2006