Locus 6719

Sequence ID 3L_DroMel_CAF1
Location 17,959,490 – 17,959,590
Length 100
Max. P 0.999797
window10930

overview

Window 0

Location 17,959,490 – 17,959,590
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 95.10
Mean single sequence MFE -19.14
Consensus MFE -17.84
Energy contribution -18.12
Covariance contribution 0.28
Combinations/Pair 1.09
Mean z-score -2.42
Structure conservation index 0.93
SVM decision value 4.10
SVM RNA-class probability 0.999797
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17959490 100 + 23771897
AAGCAAAACACCAAAACAUCUUAUUCAUAAGCGCGUGUUUUCCUUAUAGAUAAAGAUACAAAACUAUCUGUAAGACAAGCAGCCGCAAUUGAAGUUCUUA
.......................((((...(((..(((((..((((((((((............))))))))))..)))))..)))...))))....... ( -19.70)
>DroSec_CAF1 82374 100 + 1
AAGCAAAACACCAAAACAUCUCAUUCAUAAGCGCGUGUUUUCCUUAUAGAUAAACAUACAAAACUAUCUAUAAGACAAGCAGCCGCAAUUGAAGUUCUUA
.......................((((...(((..(((((..((((((((((............))))))))))..)))))..)))...))))....... ( -19.70)
>DroSim_CAF1 89237 100 + 1
AAGCAAAACACCAAAACAUCUCAUUCAUAAGCGCGUGUUUUUCUUAUAGAUAAAGAUACAAAACUAUCUGUAAGACAAGCAGCCGCAAUUGAAGUUCUUA
.......................((((...(((..(((((.(((((((((((............))))))))))).)))))..)))...))))....... ( -22.20)
>DroEre_CAF1 84590 100 + 1
AAGCAAAACACAAAAACAUCUCGUUCAUAAGCGCGUGUCUUCCUUAUAGAUAAAGAUACAAAACUAUCUGUAAGACAAGCAGUUGCAAUUGAAGUUCUUA
..((((................((......))((.(((((....((((((((............))))))))))))).))..)))).............. ( -16.80)
>DroYak_CAF1 88483 100 + 1
AAGCAAAACACGAAAACAUCUCAUUCAUAAGCGCGUGUCUUCCGUAUAGAUAAAGAUACAAAACUAUCUGUAGGACAAGCAGCCGCAAUUGAAGUUCUUA
.......................((((...(((..(((..(((.((((((((............)))))))))))...)))..)))...))))....... ( -17.30)
>consensus
AAGCAAAACACCAAAACAUCUCAUUCAUAAGCGCGUGUUUUCCUUAUAGAUAAAGAUACAAAACUAUCUGUAAGACAAGCAGCCGCAAUUGAAGUUCUUA
.......................((((...(((..(((((..((((((((((............))))))))))..)))))..)))...))))....... (-17.84 = -18.12 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:22 2006