Locus 6717

Sequence ID 3L_DroMel_CAF1
Location 17,953,154 – 17,953,251
Length 97
Max. P 0.544516
window10927

overview

Window 7

Location 17,953,154 – 17,953,251
Length 97
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 73.97
Mean single sequence MFE -25.82
Consensus MFE -9.09
Energy contribution -9.74
Covariance contribution 0.64
Combinations/Pair 1.35
Mean z-score -2.05
Structure conservation index 0.35
SVM decision value 0.02
SVM RNA-class probability 0.544516
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17953154 97 + 23771897
U-----------UCGAAUAAUUAGUCAUUUGCAUUUUAAU--GGCUGUUUUAAGUGCGCCUCCGUGUUCUUGGGAGCUUU----AUGGCCGUUUUGCAUUGCAUAAUAUAUUCG
.-----------.((((((((((..((..((((....(((--((((((...((((...(((..(....)..))).)))).----))))))))).)))).))..)))).)))))) ( -25.30)
>DroSec_CAF1 75987 97 + 1
G-----------UCGAAUAAUUAGUCAUUUGCAUUUUAAU--GGCUGUUUUAAGUGCGCCUCUGUGUUCUUGGGAGCUUU----AUGGCUGUUUUGCAUUGCACAAUAUAUUCG
.-----------.((((((..((((((((........)))--)))))......(((((((.....((((....))))...----..)))((.....))..))))....)))))) ( -25.30)
>DroSim_CAF1 82637 97 + 1
G-----------UCGAAUAAUUAGUCAUUUGCAUUUUAAU--GGCUGUUUUAAGUGCGCCUCUGUGUUCUUGGGAGCUUU----AUGGCUGUUUUGCAUUGCACAAUAUAUUCG
.-----------.((((((..((((((((........)))--)))))......(((((((.....((((....))))...----..)))((.....))..))))....)))))) ( -25.30)
>DroEre_CAF1 78051 97 + 1
G-----------UCGAAUAAUUAGUCAUUUGCAUUUUAAU--GGCUGUUUUAAGUGCGCCUCUGUGUUCUUGGGCGCUUU----AUGGCUGUUUCGAAUUGCACAAUGUUUUCG
.-----------(((((.....(((((((........)))--))))((..((((.((((((..(....)..)))))))))----)..))...)))))................. ( -23.80)
>DroWil_CAF1 110515 88 + 1
----------------AAAACCUAUAAAUCAUAUUUUAAGGAGGCUGCUGCAAGGCCAUGGCUGUGGCCCCUGCAGCUCUAUAA---GGUGUGUCCCAU-------UAGUUAGA
----------------.....(((.....(((((((((.((((.((((.....((((((....))))))...)))))))).)))---))))))......-------)))..... ( -29.20)
>DroYak_CAF1 82086 112 + 1
GUCGAGUAGUAGUCGAAUAAUUAGUCAUUUGCAUUUUAAU--GGCUGUUUUAAGUGCGCCUCUGUGUUCUUGGCAGCUUUUUAUAUCGCUGUUUCGAAUUGCACAAUAUUUUCG
...(((..(((.(..((....((((((((........)))--))))).))..).)))..)))(((((((..((((((..........))))))..))...)))))......... ( -26.00)
>consensus
G___________UCGAAUAAUUAGUCAUUUGCAUUUUAAU__GGCUGUUUUAAGUGCGCCUCUGUGUUCUUGGGAGCUUU____AUGGCUGUUUCGCAUUGCACAAUAUAUUCG
.............................((((.........((((((((((((.((((....)))).))).))))).........)))).........))))........... ( -9.09 =  -9.74 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:20 2006