| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,949,388 – 17,949,478 |
| Length | 90 |
| Max. P | 0.990274 |
| Location | 17,949,388 – 17,949,478 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 65.89 |
| Mean single sequence MFE | -20.95 |
| Consensus MFE | -13.70 |
| Energy contribution | -13.70 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.94 |
| Structure conservation index | 0.65 |
| SVM decision value | 2.20 |
| SVM RNA-class probability | 0.990274 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17949388 90 - 23771897 CAUUUCGUCCUCCCCUC-A--UUUUC-CUCU---GCAUCU--AAUUUUCGUAGUCGUUGCACGCGCUUUCAUU-----------GCAUGCGUGUGCACUGCAAU-CCCCCU .................-.--.....-....---......--.......(((((....((((((((.......-----------....)))))))))))))...-...... ( -18.50) >DroSec_CAF1 72347 84 - 1 CAUUCCCUCCUCCCCUC-A--UCACC-CUCU---GCAUCU--GAUUUUCGUAGUCGUUGCACGCGCUUUCAUU-----------GCAUGCGUGUGCA-------CCCCUAU .................-.--.....-....---......--.......((((..((.((((((((.......-----------....)))))))))-------)..)))) ( -17.60) >DroSim_CAF1 74629 91 - 1 CAUUCCCUCCUCCCCUC-A--UCACC-CUCU---GCAUCU--GAUUUUCGUAGUCGUUGCACGCGCUUUCAUU-----------GCAUGCGUGUGCACUGCAAACCCCUAU .................-.--.....-...(---(((...--((((.....))))..(((((((((.......-----------....))))))))).))))......... ( -20.00) >DroEre_CAF1 74421 91 - 1 CAUACCCCCUUCCCUGG-A--UUUCCACCCC---GCCUCU--GAAUUUCGUAGUCGUUGCACGCGCUUUCGUU-----------GCAUGCGUGUGCUUUGCACU-GCCCCU ..............(((-.--...)))....---......--.......(((((((..((((((((.......-----------....))))))))..)).)))-)).... ( -23.60) >DroWil_CAF1 105770 104 - 1 CCCUCCAUUCAACCAUCUAUCUAACC-AUCUAUCCCAUUU--G-AUUUGGUAGUCACAGCACGCGCUUUCAUUUUGAAGAAAAGCCAUGCGUGUGCAUGGUUGC---UUCC .........(((((((.......(((-(...(((......--)-)).)))).......((((((((.....((((....)))).....))))))))))))))).---.... ( -27.50) >DroYak_CAF1 78392 82 - 1 U--------UUCCAU------UUUCCCCCUC---AACUCUCCUGAUUUCGUAGUCGUUGCACGCGCUUUCGUU-----------GCAUGCGUGUGCACUGCAAU-CCCCCC .--------......------..........---...............(((((....((((((((.......-----------....)))))))))))))...-...... ( -18.50) >consensus CAUUCCCUCCUCCCCUC_A__UUACC_CUCU___GCAUCU__GAAUUUCGUAGUCGUUGCACGCGCUUUCAUU___________GCAUGCGUGUGCACUGCAAU_CCCCCU ..........................................................((((((((......................))))))))............... (-13.70 = -13.70 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:19 2006