Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,949,020 – 17,949,112 |
Length | 92 |
Max. P | 0.816230 |
Location | 17,949,020 – 17,949,112 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 89.55 |
Mean single sequence MFE | -25.53 |
Consensus MFE | -23.25 |
Energy contribution | -23.37 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -1.88 |
Structure conservation index | 0.91 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.816230 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17949020 92 - 23771897 AAUCCAUAUGGGCGUGUCAAGCGGAGGCGGGCAAUGCUAACGCACACAGUGCGUAUGGAUAAUAUUAUAGAUAGAUAGGCAUAUACAUAAUU .(((((((((.((((((...(((..((((.....))))..))))))).)).)))))))))...(((((..(((........)))..))))). ( -27.80) >DroSec_CAF1 71993 84 - 1 --UCCAUAUGGGCGUGUCAAGCGGAGGCGGGCCGUGCUAACGCACACAGUGCGUAUGGGUAAUAUUGUAGAUAGA--GGCAC----AUAAUU --(((((((((((.((((.......)))).)))((((....))))......))))))))................--.....----...... ( -27.00) >DroSim_CAF1 74275 84 - 1 --UCCAUAUGGGGGUGUCAAGCGGAGGCGGGCAGUGCUAACGCACACAGUGCGUAUGGGUAAUAUUGUAGAUAGA--GGCAU----AUAAUU --((((((((.(.((((...(((..((((.....))))..)))))))..).))))))))....((((((......--....)----))))). ( -21.80) >consensus __UCCAUAUGGGCGUGUCAAGCGGAGGCGGGCAGUGCUAACGCACACAGUGCGUAUGGGUAAUAUUGUAGAUAGA__GGCAU____AUAAUU ..((((((((.((((((...(((..((((.....))))..))))))).)).))))))))................................. (-23.25 = -23.37 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:18 2006