Locus 6713

Sequence ID 3L_DroMel_CAF1
Location 17,939,019 – 17,939,111
Length 92
Max. P 0.944176
window10922

overview

Window 2

Location 17,939,019 – 17,939,111
Length 92
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 79.03
Mean single sequence MFE -12.95
Consensus MFE -8.38
Energy contribution -8.54
Covariance contribution 0.16
Combinations/Pair 1.08
Mean z-score -2.18
Structure conservation index 0.65
SVM decision value 1.34
SVM RNA-class probability 0.944176
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17939019 92 - 23771897
------UUUAAUUUUCCUAUGAAACACCACUUUAAGAUCCCUUGAUCAUUCAUUAACCACAUAGACACGAAAGUAUCUUGAGCUAAUUUCGACACCCA
------.............(((((...........((((....))))............((.(((.((....)).)))))......)))))....... ( -10.30)
>DroSec_CAF1 62255 88 - 1
------UUAAAUUUUCCUAUGAAACAC----UUUAGAUCCCUUGAUCAUUCAAUCACCACAUAGAUACGAAAGUAUCUUGAGCUAAUUUCGACACCCA
------.............(((((...----....((((....))))............((.((((((....))))))))......)))))....... ( -14.40)
>DroSim_CAF1 64348 88 - 1
------UUAAAUUUUCCUAUGAAACAC----UUCAGAUCCCUUGAUCAUUCAAUCUCCACAUAGAUACGAAAGUAUCUUGAGCUAAUUUCGACAACCA
------.............(((((...----((((((((....))))...............((((((....))))))))))....)))))....... ( -14.60)
>DroEre_CAF1 63893 89 - 1
AUCUGCUUUAAUUUUCCUAUGAAACAUCACUUCAAAAUCCCUUGAACAUUCAAUCACCCCGUAGAUACGAAAGUAUCUUGAGCUAAUUU---------
....((((......................(((((......)))))................((((((....)))))).))))......--------- ( -13.20)
>DroYak_CAF1 67601 89 - 1
AACUGCUUUAAUUUUCCUAUGAAACAUCACUUUAAAGUCCCUUGAACAUUCAAUCGGCCCGUAGAUACAAAAGUAUCUUGAGCUAAUUC---------
....(((((((....................))))))).............(((..((.((.((((((....)))))))).))..))).--------- ( -12.25)
>consensus
______UUUAAUUUUCCUAUGAAACACCACUUUAAGAUCCCUUGAUCAUUCAAUCACCACAUAGAUACGAAAGUAUCUUGAGCUAAUUUCGACA_CCA
.........................................((((....))))......((.((((((....)))))))).................. ( -8.38 =  -8.54 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:15 2006