Locus 6712

Sequence ID 3L_DroMel_CAF1
Location 17,931,739 – 17,931,831
Length 92
Max. P 0.760820
window10921

overview

Window 1

Location 17,931,739 – 17,931,831
Length 92
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 86.75
Mean single sequence MFE -23.77
Consensus MFE -18.29
Energy contribution -17.60
Covariance contribution -0.69
Combinations/Pair 1.18
Mean z-score -1.76
Structure conservation index 0.77
SVM decision value 0.50
SVM RNA-class probability 0.760820
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17931739 92 - 23771897
UUGUUGCUGUUGUUGUCGCAAUCAUUAUUAUUUUGAGGCUACACACACACA----CACACACAUAGCAGCAAUG--GCAACAGCAUGCAUGUAGAUUU
.((((((((((((..(.((..(((.........))).((((..........----........)))).)).)..--))))))))).)))......... ( -22.47)
>DroPse_CAF1 64669 98 - 1
UUGCUGCUGUUGUUGUCGCAAUCAUUAUUAUUUUGAGGCUACACACACACACACGAGCAGCAGCAGCAGCAGUGGAGGGGCAACAUGCAUGUAGAUUU
.(((((((((((((((((...(((.........)))(......).........))).))))))))))))))(((.(..(....).).)))........ ( -29.50)
>DroSec_CAF1 55061 86 - 1
UUGUUGCUGUUGUUGUCGCAAUCAUUAUUAUUUUGAGGCUACACACA--C--------ACACACAGCAGCAAUG--GCAACAGCAUGCAUGUAGAUUU
.((((((((((((..(.((..(((.........))).(((.......--.--------......))).)).)..--))))))))).)))......... ( -21.64)
>DroSim_CAF1 57242 88 - 1
UUGUUGCUGUUGUUGUCGCAAUCAUUAUUAUUUUGAGGCUACACACACAC--------ACACACAGCAGCAAUG--GCAACAGCAUGCAUGUAGAUUU
.((((((((((((..(.((..(((.........))).(((..........--------......))).)).)..--))))))))).)))......... ( -21.49)
>consensus
UUGUUGCUGUUGUUGUCGCAAUCAUUAUUAUUUUGAGGCUACACACACAC________ACACACAGCAGCAAUG__GCAACAGCAUGCAUGUAGAUUU
..((((((((((((((.((..(((.........))).)).)))...................)))))))))))...(((......))).......... (-18.29 = -17.60 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:14 2006