Locus 6711

Sequence ID	3L_DroMel_CAF1
Location	17,920,276 – 17,920,383
Length	107
Max. P	0.997134

overview

Window 0

Location	17,920,276 – 17,920,383
Length	107
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	73.53
Mean single sequence MFE	-25.05
Consensus MFE	-17.80
Energy contribution	-17.68
Covariance contribution	-0.12
Combinations/Pair	1.14
Mean z-score	-2.23
Structure conservation index	0.71
SVM decision value	2.80
SVM RNA-class probability	0.997134
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17920276 107 + 23771897
CAAGUUGCGGGAAUGCGCAUUAUUGAGUAUUCCUGUAAGAAAG----AAAAAUAAUUUCAAAUUAUGAGAGGAA---UAAUAAGAGUGUAUGCUUCUAAUUAAAUACUGUGAAA
....((((((((((((.((....)).))))))))))))...((----((..(((..(((..(((((.......)---))))..)))..)))..))))................. ( -22.70)
>DroSec_CAF1 43759 107 + 1
CAAGUUGCGGGAAUGCGCAUUAUUGAGUAUUCCUGCAAAAAAG----AAAAAUAAUUUCAAAUUAUGAGGGGAA---UAAUAAGAGUGUAUGCUUUUGAUUAAAUACUGCGAAA
....((((((((((((.((....)).))))))))))))....(----(((.....)))).........(.((..---((((((((((....)))))).))))....)).).... ( -24.70)
>DroEre_CAF1 44832 107 + 1
CAAGUUGCGGGAGUGGGCAUUAUUGAGUAUUCCUGCAAGAGAGCAA---AAAUAAUUUCCAGUUACGAGGGGUGGCACUGUGAAGUCGUAUCUCUACUAUUAACGAGUGU----
.....((((((((((..((....))..))))))))))(((((....---..(..((((((((((((.....)))..)))).)))))..).)))))...............---- ( -27.00)
>DroYak_CAF1 47454 103 + 1
CAAGUUGCGGGAAUGCGCAUUGCUGAGUAUUCCUGCAAGAAAUCAAAAAAAAUAAUUUCAAAUUAAAAGGGGAG---UUAUAAAAACGUAUCUCUACUGUUAACU----U----
....((((((((((((.((....)).))))))))))))(((((...........)))))...((((.((..(((---.(((......))).)))..)).))))..----.---- ( -25.80)
>consensus
CAAGUUGCGGGAAUGCGCAUUAUUGAGUAUUCCUGCAAGAAAG____AAAAAUAAUUUCAAAUUAUGAGGGGAA___UAAUAAAAGCGUAUCCCUACUAUUAAAUACUGU____
....((((((((((((.((....)).))))))))))))............................................................................ (-17.80 = -17.68 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:13 2006