Locus 6710

Sequence ID 3L_DroMel_CAF1
Location 17,917,991 – 17,918,083
Length 92
Max. P 0.628299
window10919

overview

Window 9

Location 17,917,991 – 17,918,083
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 83.77
Mean single sequence MFE -19.11
Consensus MFE -15.15
Energy contribution -16.67
Covariance contribution 1.52
Combinations/Pair 1.12
Mean z-score -1.69
Structure conservation index 0.79
SVM decision value 0.19
SVM RNA-class probability 0.628299
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17917991 92 + 23771897
GGUAGUUUUAAAAUUAGAAAACAAUAUUUAUUCCACUUGAUUCUUUAGCAUAGAGAAGAGCUUUGUGCCAAAGGAGAAAUCAGGAAUACGGG
....(((((........)))))......((((((........((((.((((((((.....)))))))).))))((....)).)))))).... ( -21.70)
>DroSec_CAF1 41494 92 + 1
GGUAGUUUUAAAAUUAGAAAACAAUAUUUAUUCCACUUGAUUCUUUAGCAUAGAGAAGAGCUUUGUGCCAAAGGAGAAAUCAGGAAUACGGG
....(((((........)))))......((((((........((((.((((((((.....)))))))).))))((....)).)))))).... ( -21.70)
>DroSim_CAF1 44171 92 + 1
GGUAGUUUUAAAAUUAGAAAACAAUAUUUAUUCCACUUGAUUCUUUAGCAUAGAGAAGAGCUUUGUGCCAAAGGAGAAAUCAGGAAUACGGG
....(((((........)))))......((((((........((((.((((((((.....)))))))).))))((....)).)))))).... ( -21.70)
>DroEre_CAF1 42509 92 + 1
GGUAGUUUUAAAAUUAGAAAACAAUAUUUAUUCCACUUGAUUCUUUAGCAUAGAGAAGAGCUUUGUGCCAAAGGAGAACUCAGGAAUACGGG
....(((((........)))))......((((((......((((((.((((((((.....)))))))).)))))).......)))))).... ( -21.32)
>DroYak_CAF1 45093 92 + 1
GGUAGUUUUAAAAUUAGAAAACAAUAUCUAUUCCACUUGAUUCUUUAGCAUAGAGAAGAGCUUUGUGCCAAAGGAGAACUCAGGAAUACGGA
....(((((........)))))....((((((((......((((((.((((((((.....)))))))).)))))).......)))))).)). ( -21.52)
>DroPer_CAF1 44751 69 + 1
CUUUGU-UUAAAAUUAGAAAACAAUAUUUUUGUCAGGGGGUUUCU----------------UUUGUGCCAAGGGUUUA------AAAACUGA
(((((.-.(((((.((........)).))))).)))))(((((..----------------.(((.(((...))).))------)))))).. (  -6.70)
>consensus
GGUAGUUUUAAAAUUAGAAAACAAUAUUUAUUCCACUUGAUUCUUUAGCAUAGAGAAGAGCUUUGUGCCAAAGGAGAAAUCAGGAAUACGGG
....(((((........)))))......((((((......((((((.((((((((.....)))))))).)))))).......)))))).... (-15.15 = -16.67 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:12 2006