Locus 671

Sequence ID 3L_DroMel_CAF1
Location 1,988,080 – 1,988,173
Length 93
Max. P 0.786211
window1024

overview

Window 4

Location 1,988,080 – 1,988,173
Length 93
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 82.61
Mean single sequence MFE -22.17
Consensus MFE -15.71
Energy contribution -16.35
Covariance contribution 0.64
Combinations/Pair 1.22
Mean z-score -2.27
Structure conservation index 0.71
SVM decision value 0.57
SVM RNA-class probability 0.786211
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1988080 93 + 23771897
GCUAUAAAAUUCCCUCGUAAUUAUUUGCACAA-AAUGCUUAAUUGUUUGCGUUUUACAGCGAAUUUCGUUGAGCGCC--CCUAGCAAAUAUUGACG----
...............(((...(((((((....-..((((((((.((((((........))))))...))))))))..--....)))))))...)))---- ( -22.50)
>DroPse_CAF1 50765 93 + 1
GCUAUAAAAAUUC-ACGUAAUUAUUUGCACGA-AAUGCUUAAUUGUUUACAUUUUACAGGGAAUUUCC-CGAGCAUCUCUCUGGCAAAUAUUGACG----
.............-.(((...(((((((..((-.((((((...(((.........)))(((.....))-))))))).))....)))))))...)))---- ( -22.10)
>DroEre_CAF1 44873 93 + 1
GCUAUAAAAUUUCCUCGUAAUUAUUUGCACAA-AAUGCUUAAUUGUUUGCGUUUCACAGCGAAUUUCGUUGAGCGCC--CCUGGCAAAUAUUGACG----
...............(((...(((((((....-..((((((((.((((((........))))))...))))))))..--....)))))))...)))---- ( -23.60)
>DroWil_CAF1 57893 96 + 1
GCUAUAAAAAUUGUUUGUAAUUAUUUGCACAAAAAUGCUUAAUUGUUUGCAUUUUACAAUGAAUUUGC-UGC-UGUU--GUUGGCAAAUAUUGACAGGAC
.............(((((...(((((((...(((((((..........))))))).(((..(......-...-..).--.))))))))))...))))).. ( -17.40)
>DroAna_CAF1 35974 90 + 1
GCCAUAAAAUC---CCGUAAUUAUUUGCACAA-AAUGCUUAAUUGUUUGCGUUUUACAGCGAAUUUCGUUAAGCGUC--CCUGGCAAAUAUUGACG----
...........---.(((...(((((((.((.-.(((((((((.((((((........))))))...))))))))).--..)))))))))...)))---- ( -25.30)
>DroPer_CAF1 51223 93 + 1
GCUAUAAAAAUUC-ACGUAAUUAUUUGCACGA-AAUGCUUAAUUGUUUACAUUUUACAGGGAAUUUCC-CGAGCAUCUCUCUGGCAAAUAUUGACG----
.............-.(((...(((((((..((-.((((((...(((.........)))(((.....))-))))))).))....)))))))...)))---- ( -22.10)
>consensus
GCUAUAAAAAUUC_UCGUAAUUAUUUGCACAA_AAUGCUUAAUUGUUUGCAUUUUACAGCGAAUUUCC_UGAGCGUC__CCUGGCAAAUAUUGACG____
...............(((...(((((((......(((((((...((((((........)))))).....))))))).......)))))))...))).... (-15.71 = -16.35 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:07 2006