| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,908,567 – 17,908,675 |
| Length | 108 |
| Max. P | 0.974800 |
| Location | 17,908,567 – 17,908,675 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 73.62 |
| Mean single sequence MFE | -20.50 |
| Consensus MFE | -15.37 |
| Energy contribution | -15.60 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.75 |
| SVM decision value | 1.74 |
| SVM RNA-class probability | 0.974800 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17908567 108 + 23771897 AAAUAUUCGAUUUUAUGAAGGACCUGAGGCAAUUGUCCUAGGUCCGAUGAUA-AUGUAUACAAUUAAUAAGUUUUCUUAUGACUAAUUCUUUAACCAAUUCACCACAUA .............((((..(((((((.(((....))).)))))))(.(((..-...((...((((((((((....)))))...)))))...))......))).).)))) ( -19.10) >DroSec_CAF1 32329 108 + 1 AAAUAUUCGAUUUUAUGAAGGACCUGAGGCAAUUGUCCUAGGUCCGAUGAAA-AUGUAUACAAUUAAUAAGUUUUCUUCUGACGAAAUCUUUACCCAAUUCACCACAUA ........((((((.....(((((((.(((....))).)))))))((.((((-((.(((.......))).)))))).))....)))))).................... ( -23.90) >DroEre_CAF1 33222 87 + 1 AAAUAUGCGAUCUUAUGAAGGACCUGAAGCAAUUGUCCUAGGUCCGAUGGGACCUUUUUAUG-CAAA-------------------CUCUUUGCCUAAUUCACUACU-- ........(.((((((...(((((((..((....))..))))))).)))))).)...(((.(-(((.-------------------....)))).))).........-- ( -18.50) >consensus AAAUAUUCGAUUUUAUGAAGGACCUGAGGCAAUUGUCCUAGGUCCGAUGAAA_AUGUAUACAAUUAAUAAGUUUUCUU_UGAC_AAAUCUUUACCCAAUUCACCACAUA ..........((((((...(((((((.(((....))).))))))).))))))......................................................... (-15.37 = -15.60 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:11 2006