Locus 6708

Sequence ID 3L_DroMel_CAF1
Location 17,906,610 – 17,906,704
Length 94
Max. P 0.917913
window10917

overview

Window 7

Location 17,906,610 – 17,906,704
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 76.29
Mean single sequence MFE -27.38
Consensus MFE -17.54
Energy contribution -18.88
Covariance contribution 1.34
Combinations/Pair 1.24
Mean z-score -1.77
Structure conservation index 0.64
SVM decision value 1.12
SVM RNA-class probability 0.917913
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17906610 94 + 23771897
UUUAUGUUGGGUGGUUUUGGGCGUUGCCCUUCAAAGAACCCCGCCCAUUGCUUAUGUUCGCGUGGGCUAAAAUAUGCAGCCUAAUAUCAGGUAA
...(((((((((((((((((((...)))).....))))))..((((((.((........))))))))...........)))))))))....... ( -29.70)
>DroSec_CAF1 30340 93 + 1
CUUAUGUUGGGUGGUU-UGGGCGUUGCCCUUCCAAGAACCCCGCCCAUUGCUUAUGUUCGCGUGGGCUAAAAUAUGCAGCCUAAUAUCAGGUAA
((.(((((((((((..-.((((...))))..)).........((((((.((........))))))))...........))))))))).)).... ( -31.10)
>DroSim_CAF1 30613 93 + 1
CUUAUGUUGGGUGGUU-UGGGCGUUGCCCUUCACAGAACCCCGCCCAUUGCUUAUGUUCGCGUGGGCUAAAAUAUGCAGCCUAAUAUCAGGUAA
((.(((((((((((((-(((((...))))......)))))..((((((.((........))))))))...........))))))))).)).... ( -30.60)
>DroEre_CAF1 31336 75 + 1
AAUAUGUUGGCUGGUU-UGGGCGUUGCCCU------------------GGCUUAUGUGCGCGUGGGCCAAAAUAUGCAGCCUAAUAUCAGGUAA
...((((((((((...-.((((...))))(------------------((((((((....))))))))).......))))).)))))....... ( -28.00)
>DroYak_CAF1 32022 93 + 1
AUUAUGUUGGGUGGCU-UGGGCGUUGCCCUUCGAAGAACCCCGCCCACUGCUUAUGAGCGCGUGGGCUAAAAUAUGCAGCCUAAUAUCAGGUAA
...(((((((((.((.-.((((...)))).............((((((((((....)))).))))))........)).)))))))))....... ( -33.40)
>DroAna_CAF1 29080 80 + 1
AUUAUGCGAGGCUUUU-U--AUGUUA---UU----AGCCCCUGCCUCCUUAUUAAA----UGCCGACUAAAAUAUGCAGCCUAAUGCCAGGUAA
.......(.((((..(-.--.....)---..----)))).)(((((...(((((..----(((............)))...)))))..))))). ( -11.50)
>consensus
AUUAUGUUGGGUGGUU_UGGGCGUUGCCCUUC_AAGAACCCCGCCCAUUGCUUAUGUUCGCGUGGGCUAAAAUAUGCAGCCUAAUAUCAGGUAA
....((((((((((....((((...))))...........)))))))..(((((((....)))))))........)))((((......)))).. (-17.54 = -18.88 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:10 2006