| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,900,425 – 17,900,516 |
| Length | 91 |
| Max. P | 0.923559 |
| Location | 17,900,425 – 17,900,516 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 81.74 |
| Mean single sequence MFE | -17.15 |
| Consensus MFE | -15.79 |
| Energy contribution | -15.60 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.923559 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17900425 91 + 23771897 AAUAUAUGUAUGUAUGUAUGUCCAAUAUAUAUGUCCAAGAGUCGGGGCCAGUUCAACAAACCCCAUUGAACUCAAUCCGGAGCAAUGACAC ...........((((((((.....))))))))(((...(..(((((...(((((((.........)))))))...)))))..)...))).. ( -20.30) >DroSec_CAF1 24153 69 + 1 AAUAUAUGUA---------------------UGUCCAUGAGUCGGGG-CAGUUCAACAAACCCCAUUGAACUCAAUCCGGAGCAAUGACAC ..........---------------------((((..((..(((((.-.(((((((.........)))))))...)))))..))..)))). ( -17.30) >DroSim_CAF1 24414 70 + 1 AAUAUAUGUA---------------------UGUCCAAGAGUCGGGGCCAGUUCAACAAACCCCAUUGAACUCAAUCCGGAGCAAUGACAC ..........---------------------((((...(..(((((...(((((((.........)))))))...)))))..)...)))). ( -16.20) >DroYak_CAF1 25632 74 + 1 AAUAUACAU-----------------ACAUAUGUUGAAGAGUCGGGGCCAGUUCAACAAACCCCAUUGAACUCAAUCCGGAGCAAUGACAC .........-----------------.....(((((..(..(((((...(((((((.........)))))))...)))))..)..))))). ( -14.80) >consensus AAUAUAUGUA_____________________UGUCCAAGAGUCGGGGCCAGUUCAACAAACCCCAUUGAACUCAAUCCGGAGCAAUGACAC ...............................((((...(..(((((...(((((((.........)))))))...)))))..)...)))). (-15.79 = -15.60 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:01 2006