Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,872,521 – 17,872,619 |
Length | 98 |
Max. P | 0.856600 |
Location | 17,872,521 – 17,872,619 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 91.42 |
Mean single sequence MFE | -28.00 |
Consensus MFE | -23.95 |
Energy contribution | -24.70 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.45 |
Structure conservation index | 0.86 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.856600 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17872521 98 + 23771897 ACUCAAUUCGGUUGCCAACGAGUACAGCUGUUGCUGUAGUUGUUGUUCUUGUAGUCGUCUAUACUGCCGU---CGAUUUGUUGGCACCUUCAACUUUUGAU ..((((...(((((.((((((.((((((....)))))).))))))....(((((....))))).(((((.---........)))))....))))).)))). ( -28.60) >DroSim_CAF1 41565 101 + 1 ACUCAAUUCGGUUGCCAACGAGUACAGCUGUUGCUGUUGUUGUUGUUCUUGUAGUCGUCUAUACUGCCGUUUUCGAUUUGUUGGCACCUUCAACUUUUGAU .........(((.(((((((((((((((....))))).............(((((.......)))))........)))))))))))))............. ( -26.60) >DroEre_CAF1 39374 94 + 1 ACUCAAUUCGGUUGCCAACGAGUACAGCUGUUGCUGUAGUUGUUGUU------GUCGUCUAUAC-GCCGUUUUCGAUUUGUUGGCACCUCCAACUUUCGAU ........((((...((((((.((((((....)))))).))))))..------...((....))-))))...((((...(((((.....)))))..)))). ( -28.80) >consensus ACUCAAUUCGGUUGCCAACGAGUACAGCUGUUGCUGUAGUUGUUGUUCUUGUAGUCGUCUAUACUGCCGUUUUCGAUUUGUUGGCACCUUCAACUUUUGAU .........(((.(((((((((((((((....))))).............(((((.......)))))........)))))))))))))............. (-23.95 = -24.70 + 0.75)
Location | 17,872,521 – 17,872,619 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 91.42 |
Mean single sequence MFE | -23.33 |
Consensus MFE | -21.03 |
Energy contribution | -21.03 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.07 |
Structure conservation index | 0.90 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.831107 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17872521 98 - 23771897 AUCAAAAGUUGAAGGUGCCAACAAAUCG---ACGGCAGUAUAGACGACUACAAGAACAACAACUACAGCAACAGCUGUACUCGUUGGCAACCGAAUUGAGU .............(((((((((...((.---..((..((....))..))....))........((((((....))))))...)))))).)))......... ( -22.50) >DroSim_CAF1 41565 101 - 1 AUCAAAAGUUGAAGGUGCCAACAAAUCGAAAACGGCAGUAUAGACGACUACAAGAACAACAACAACAGCAACAGCUGUACUCGUUGGCAACCGAAUUGAGU .............(((((((((...........((..((....))..))...............(((((....)))))....)))))).)))......... ( -21.40) >DroEre_CAF1 39374 94 - 1 AUCGAAAGUUGGAGGUGCCAACAAAUCGAAAACGGC-GUAUAGACGAC------AACAACAACUACAGCAACAGCUGUACUCGUUGGCAACCGAAUUGAGU .((((...((((...(((((((...........(.(-((....))).)------.........((((((....))))))...))))))).)))).)))).. ( -26.10) >consensus AUCAAAAGUUGAAGGUGCCAACAAAUCGAAAACGGCAGUAUAGACGACUACAAGAACAACAACUACAGCAACAGCUGUACUCGUUGGCAACCGAAUUGAGU .............(((((((((..........((..........))..................(((((....)))))....)))))).)))......... (-21.03 = -21.03 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:59 2006