Locus 6701

Sequence ID 3L_DroMel_CAF1
Location 17,866,531 – 17,866,651
Length 120
Max. P 0.551912
window10904

overview

Window 4

Location 17,866,531 – 17,866,651
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.22
Mean single sequence MFE -39.60
Consensus MFE -25.64
Energy contribution -25.87
Covariance contribution 0.23
Combinations/Pair 1.36
Mean z-score -1.39
Structure conservation index 0.65
SVM decision value 0.04
SVM RNA-class probability 0.551912
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17866531 120 - 23771897
AUAAUCGCCGGCUUCACCGUCGCCAUCAUGAACAUACCUCAUGGCAUGGCUUAUGGCAUUCUAGCAGGAGUUUCGGCUGGAAAUGGUCUCUAUAUGGCCGUGUUUCCGGUGCUGGCCUAC
......((((((...((((.......(((((.......)))))((((((((((((((((((((((.((....)).))))).))))....))))).))))))))...)))))))))).... ( -40.90)
>DroVir_CAF1 286465 120 - 1
AUUAUAUCUGGAGUUACAGUUGCCAUUAUGAAUAUACCUCAUGGCAUGGCAUAUGGAAUGUUGGCUGGUGUUUCCGCUGGAAAUGGGCUCUAUAUGGCCGUUUUUCCCGUGCUUGUUUAU
.........((((..((...(((((...(((.......)))))))).((((((((((.((((..(..(((....)))..).))))...))))))).)))))..))))............. ( -29.00)
>DroPse_CAF1 29055 120 - 1
GUCAUCGCCGGCUUCACGGUGGCUAUUAUGAACAUCCCGCAUGGCAUGGCCUACGGCAUCCUGGCCGGAGUAUCAGCCGGCAAUGGCCUGUAUAUGGCCGUGUUUCCGGUGCUGGUCUAU
.(((.((((((...((((((((((((((((.........))))..))))))((((((......(((((........)))))....))).)))....))))))...)))))).)))..... ( -46.10)
>DroWil_CAF1 33584 120 - 1
AUAAUCGCUGGCUUCACCGUGGCCAUUAUGAAUAUACCUCAUGGCAUGGCCUAUGGCCUUCUGGCUGGCGUUUCGGCCGGCAAUGGCCUAUAUAUGGCUGUAUUUCCGGUGCUCGUCUAC
.....((((((...(((((((((((((((((.......)))))..))))))...((((.....((((((......))))))...)))).....)))).)).....))))))......... ( -42.30)
>DroMoj_CAF1 360110 120 - 1
AUUAUAUCAGGAUUUACUGUCGCUAUUAUGAAUAUACCCCAUGGAAUGGCCUAUGGAAUACUGGCUGGUGUUUCCGCUGGAAAUGGUCUCUAUAUGGCCGUAUUUCCAGUGCUUGUCUAU
.........(((..((((((((.((((...........((((((......)))))))))).)))).))))..)))(((((((((((((.......))))))..))))))).......... ( -33.30)
>DroAna_CAF1 29093 120 - 1
AUUAUAGCCGGAUUUACGGUGGCCAUCAUGAAUAUACCCCACGGCAUGGCCUACGGUCUGUUGGCGGGAGUUUCGGCCGGAAAUGGCCUCUACAUGGCUGUGUUUCCGGUCUUGGUAUAC
......((((......)))).((((....(((...(((((.(((((.((((...)))))))))..))).)))))((((((((((((((.......))))..)))))))))).)))).... ( -46.00)
>consensus
AUUAUAGCCGGAUUCACCGUGGCCAUUAUGAAUAUACCUCAUGGCAUGGCCUAUGGCAUGCUGGCUGGAGUUUCGGCCGGAAAUGGCCUCUAUAUGGCCGUGUUUCCGGUGCUGGUCUAC
......(((((.........((((((((((.........))))..)))))).........)))))..........(((((((((((((.......))))..))))))))).......... (-25.64 = -25.87 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:57 2006