Locus 6700

Sequence ID 3L_DroMel_CAF1
Location 17,866,198 – 17,866,299
Length 101
Max. P 0.570724
window10903

overview

Window 3

Location 17,866,198 – 17,866,299
Length 101
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 78.39
Mean single sequence MFE -23.12
Consensus MFE -16.72
Energy contribution -16.17
Covariance contribution -0.55
Combinations/Pair 1.36
Mean z-score -1.02
Structure conservation index 0.72
SVM decision value 0.07
SVM RNA-class probability 0.570724
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17866198 101 - 23771897
UUUUAAAUUCUACUCUAAAUGCGGAUCCCAUUACUAAAAUAGAGGUGGCGACCUCUUUGGCACUUACCGUGGGAAUUGUAAACGUAAGUUGUCGCUUAAAA----
....................((((.((((((.........((((((....))))))..((......))))))))......(((....))).))))......---- ( -22.70)
>DroSec_CAF1 32032 101 - 1
UUUUAAAUUCUACUCUAAAUGCGGAUCCCAUUACUAAAAUAGAGGUGGCGACCUCUUUGGCACUUACCGUGGGAAUUGUAAACGUAAGUUGUCUUUUAAAG----
.((((((............(((((.((((((.........((((((....))))))..((......)))))))).)))))(((....)))....)))))).---- ( -23.10)
>DroSim_CAF1 35769 101 - 1
UUUUAAAUUCUACUCUAAAUGCGGAUCCCAUUACUAAAAUAGAGGUGGCGACCUCUUUGGCACUUACUGUGGGAAUUGUAAACGUAAGUUGUCUUUUAAAG----
.((((((............(((((.((((((.........((((((....))))))............)))))).)))))(((....)))....)))))).---- ( -22.50)
>DroEre_CAF1 33094 104 - 1
UUUUAAAUUCGACUCUAAAUGCGGAUCACAUUACAAAAAUAGAAGUGGCAACUUCUCUGGCCCUUACCGUGGGAAUUGUAAACGUAAGUUAUCUUUACAGA-AUU
.....(((((((.(((......)))))...((((((....((((((....))))))....(((.......)))..))))))..(((((.....))))).))-))) ( -18.10)
>DroYak_CAF1 49541 102 - 1
UUUUAAAUUCGACUCUGAAUGCGGAUCCCAUUACAAAAAUAGAGGUGGCAACCUCUUUGGCCCUUACCGUGGGAAUCGUAAACGUAAGUUAUAUUUUCAGA-A--
.............(((((((((((.((((((.........((((((....))))))..((......)))))))).)))))(((....))).....))))))-.-- ( -30.70)
>DroAna_CAF1 28841 93 - 1
---------GG--ACCACCAGUGGAUCAAAUCACGCACCUGGAGGUGGUUACUUCUCUGGCCCUGACUGUGGGAAUAGUUAAUGUGAGU-AUAUUUCAAAGAGUC
---------.(--((((((.((((......)))).(....)..)))))))....((((.....(((((((....)))))))...((((.-....)))).)))).. ( -21.60)
>consensus
UUUUAAAUUCGACUCUAAAUGCGGAUCCCAUUACUAAAAUAGAGGUGGCGACCUCUUUGGCACUUACCGUGGGAAUUGUAAACGUAAGUUAUCUUUUAAAA____
...................(((((.((((((.........((((((....))))))..((......)))))))).)))))(((....)))............... (-16.72 = -16.17 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:56 2006