Locus 670

Sequence ID 3L_DroMel_CAF1
Location 1,986,338 – 1,986,429
Length 91
Max. P 0.591638
window1023

overview

Window 3

Location 1,986,338 – 1,986,429
Length 91
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 74.98
Mean single sequence MFE -26.97
Consensus MFE -16.57
Energy contribution -17.68
Covariance contribution 1.12
Combinations/Pair 1.30
Mean z-score -1.31
Structure conservation index 0.61
SVM decision value 0.12
SVM RNA-class probability 0.591638
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1986338 91 + 23771897
GGCGAGGCGACCGACGAGAUAGGAUAACUUUUUGCCCGAAUUCGUGUUUGAAUUGGUUCGGGGGGCUAGUGAGACGAACUAGCCG-GGCU-AA
.....(((..((..(((((.((.....)))))))(((((((..((......))..))))))).(((((((.......))))))))-))))-.. ( -28.20)
>DroPse_CAF1 48108 79 + 1
C--GAAACGACUAAAG------GGGGACGCUGGGCCAGGGAUAAUGCGGGUAUUUGUU------GCCUCUCAAAGGUAGUUUCUGCGGUGGAA
.--(((((.(((....------((((.(((....(....).....)))((((.....)------)))))))...))).))))).......... ( -17.00)
>DroSec_CAF1 37311 89 + 1
G--GAAGCGAGCUGCGAGAUAGGAUAACUUUUUGCCCGAAUUCGUGUUUGAAUUGGUUCGGG-GGCAAGUGAGACGAACUAGCCG-GGCUCAA
.--.....(((((((((((.((.....))))))))((((((..((......))..)))))).-(((.(((.......))).))).-))))).. ( -27.90)
>DroSim_CAF1 51781 89 + 1
G--GAAGCGAGCUGCGAGAUAGGAUAACUUUUUGCCCGAAUUCGUGUUUGAAUUGGUUCGGG-GGCUAGUGAGACGAACUAGCCG-GGCUCAA
.--.....(((((((((((.((.....))))))))((((((..((......))..)))))).-(((((((.......))))))).-))))).. ( -32.40)
>DroEre_CAF1 43174 89 + 1
G--GAAGCAACCGAUGAGAAAGGAUAACUUUUUGCCCGAAUUUGUGUUUGAAUUGGUUCGGG-GGCUAGUGAAACGAACUAGCCG-GGCUCAA
.--((.((..((....((((((.....)))))).(((((((..((......))..)))))))-(((((((.......))))))))-))))).. ( -29.80)
>DroYak_CAF1 38215 89 + 1
G--CAAGCAAACGAUGAGGUAGGAUAACUUUUUGCCCGAAUUUCUGUUUGAAUUGGUUCGGG-GGCUAGUGAAACGAACUAGCCG-GGCUCAA
.--...........((((.(..............((((((((((.....)))...)))))))-(((((((.......))))))).-).)))). ( -26.50)
>consensus
G__GAAGCGACCGACGAGAUAGGAUAACUUUUUGCCCGAAUUCGUGUUUGAAUUGGUUCGGG_GGCUAGUGAAACGAACUAGCCG_GGCUCAA
.....(((..........................((((((((.((......)).)))))))).(((((((.......)))))))...)))... (-16.57 = -17.68 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:06 2006