Locus 67

Sequence ID 3L_DroMel_CAF1
Location 270,797 – 270,890
Length 93
Max. P 0.591743
window95

overview

Window 5

Location 270,797 – 270,890
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 84.44
Mean single sequence MFE -30.40
Consensus MFE -21.37
Energy contribution -23.40
Covariance contribution 2.03
Combinations/Pair 1.15
Mean z-score -2.33
Structure conservation index 0.70
SVM decision value 0.12
SVM RNA-class probability 0.591743
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 270797 93 + 23771897
UUUUCGGUGAAAAUUUCUAUGGAGUGCCCGCAACUGGACGUAAGUCCAUAUCUCCCACCACCAAGAAGGAGGAAAUAUUCCUGAACAAGUCCG
..(((((.(((.((((((..((((((....))..(((((....)))))...)))).....((.....)).)))))).))))))))........ ( -25.10)
>DroSec_CAF1 43141 93 + 1
UGUUCGGUGAAAAUUUCUAUGGAGUGCCCGGCACUGGACGUAAGUCCAUAUCUCCCGCCACCAAGAAGGAGGAAAUAUUCCUGAACAAGUCCG
(((((((.(((.((((((.((((((((...)))))((((....))))..........)))((.....)).)))))).))))))))))...... ( -31.90)
>DroSim_CAF1 38672 93 + 1
UGUUCGGUGAAAAUUUCUAUGGAGUGCCCGGCACUGGACGUAAGUCCAUAUCUCCCGCCACCAAGAAGGAGGAAAUAUUCCUGAACAAGUCCG
(((((((.(((.((((((.((((((((...)))))((((....))))..........)))((.....)).)))))).))))))))))...... ( -31.90)
>DroEre_CAF1 39349 93 + 1
UGUUCGGCGAAAAUUUCUACGGGAUGCCCGGCACUGGACGUAAGUCCAUAUCCCCCGCCACCAAGAAGGAGGAAAUAUUCCUGAACAAGUCCG
(((((((.(((.((((((.((((.(((...))).(((((....))))).....))))...((.....)).)))))).))))))))))...... ( -32.20)
>DroYak_CAF1 39164 93 + 1
UGUUUGGAGAAAAUUUCUACGGAGUGCCCGGCACUGGACGCAAGUCCAUCUCGCCUGCCACCAAAAAGGAGGAAAUAUUCCUCAACAAGUCCG
....((((((...))))))(((((((.(.(((..(((((....)))))....))).).))).......(((((.....)))))......)))) ( -29.60)
>DroMoj_CAF1 62897 93 + 1
UGUUCGGUGAGACCUUCUAUGGCAUACCCGAUGCCAUGCGAAAGUCCCAUUCCCGAGCCGGCCACAAGGAGGAGAUCUUCCUCAACAAAUCGG
.((((((((.(((.(((((((((((.....)))))))).))).))).))...))))))(((.....((((((....)))))).......))). ( -31.70)
>consensus
UGUUCGGUGAAAAUUUCUAUGGAGUGCCCGGCACUGGACGUAAGUCCAUAUCUCCCGCCACCAAGAAGGAGGAAAUAUUCCUGAACAAGUCCG
(((((((.(((.((((((.(((.....)))....(((((....))))).........((........)).)))))).))))))))))...... (-21.37 = -23.40 +   2.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:28 2006