Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,865,681 – 17,865,798 |
Length | 117 |
Max. P | 0.629094 |
Location | 17,865,681 – 17,865,798 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 70.71 |
Mean single sequence MFE | -40.00 |
Consensus MFE | -11.91 |
Energy contribution | -12.17 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.40 |
Mean z-score | -2.05 |
Structure conservation index | 0.30 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.629094 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17865681 117 + 23771897 ACGAUAGCAAUGGCAAUUGAAUCUACGGCCACCUUUGGUACAAGAUCCAAGCGCGGAAGAACUGGCUCCGGUAAGCCACUGGGUAUUUUUCCCACUGGAUUUACGUUGUAAUCGACA .((((.((((((((..(((.((((...((((....))))...)))).)))..))(((((((...((.(((((.....))))))).)))))))...........)))))).))))... ( -36.20) >DroVir_CAF1 278300 117 + 1 ACUAUUGCAAUGGCAAUAGAAUCAACUGCUACCAGUGGGACCAGAUCCAGACGUGGUAAUGUUGGAUUUGGCAAUCCUCUUGGUAUUGUACCUACUAACUGCACAUUAAACUCUUCG .(((((((....))))))).......(((....((((((.((((((((((.(((....)))))))))))))((((((....)).))))..))))))....))).............. ( -37.50) >DroPse_CAF1 28257 117 + 1 ACGACGGCAAUGGCAAUCGAGUCGAGGGCCACCUUCGGCACCAGGUCGAGCCGGGGCAGAACGGGCUCCGGCAAGCCGCUGGGUAUCACUCCCACCAGCUGCACAUUGAACUGCGGC .((.(((((((((((.....((((((((...))))))))....(((...((((((((.......))))))))..)))(((((............)))))))).)))))..))))).. ( -49.80) >DroWil_CAF1 32795 117 + 1 ACAAUUGCUAUGGCAAUAGAGUCCACGGCCACUUUGGGUAUUAGAUCCAAACGUGGCAGAGUUGGUUCUGGCAAACCACUUGGGAUGACACCAACCAAUUCCACGGCGAACUCUUGA ...(((((....)))))(((((.(.((((((((((((((.....))))))).))))).(((((((((...(((..((....))..)).)...)))))))))..))..).)))))... ( -41.10) >DroYak_CAF1 49020 117 + 1 ACUAUAGCAAUGGCAAUCGAAUCCACAGCCACCUUUGGUACAAGAUCCAAGCGCGGCAGAGCGGGUUCUGGUAAGCCACUGGGUAUUGUUCCCACUGGAUUGACGUUGUACUCAACA ......((((((.(((((((((((.(.(((.(.(((((........))))).).)))...).))))))........((.((((.......)))).))))))).))))))........ ( -35.80) >DroAna_CAF1 28328 117 + 1 ACAAUGGCGAUGGCAAUCGAAUCCACUGCCACCUUGGGCACCAAGUCCAGGCGCGGCAGCACUGGCUCCGGCAGACCACUGGGAAUAUUCCCCACCAGAUUCACCUGGUACUCCUGA ....(((((((....))))......(((((..(((((((.....)))))))...((.(((....)))))))))).)))..((((....)))).(((((......)))))........ ( -39.60) >consensus ACAAUAGCAAUGGCAAUCGAAUCCACGGCCACCUUUGGUACCAGAUCCAAGCGCGGCAGAACUGGCUCCGGCAAGCCACUGGGUAUUAUUCCCACCAGAUUCACGUUGAACUCCUCA .......(((((...............(((.((((.(((.....))).))).).)))....((((....((....))..((((.......)))))))).....)))))......... (-11.91 = -12.17 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:55 2006