Locus 6698

Sequence ID 3L_DroMel_CAF1
Location 17,857,451 – 17,857,552
Length 101
Max. P 0.924381
window10900 window10901

overview

Window 0

Location 17,857,451 – 17,857,552
Length 101
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 81.29
Mean single sequence MFE -28.77
Consensus MFE -18.83
Energy contribution -19.50
Covariance contribution 0.67
Combinations/Pair 1.09
Mean z-score -2.90
Structure conservation index 0.65
SVM decision value 1.16
SVM RNA-class probability 0.924381
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17857451 101 + 23771897
UGAUUUUCCUGCGUGACCAUGGGAUUCCCCUCCUCGUUGGCGCUAUUCGAUCAUAUUGAAUAGUAGACAGGAGAAUAUCAUGCCAAAGAUCUAA---AAAUAA---A
.((((((...((((((....(((...)))(((((.(((...((((((((((...)))))))))).))))))))....))))))..))))))...---......---. ( -30.60)
>DroPse_CAF1 20391 101 + 1
UGCUCUUGCAGCUG---CAACUCCUCGCCGAUCUCUUUGGCGCUAUUCAAUCAUAUUGAAUAGUAGACAAGAGAAUAUCAUGCCAAAAAUCUACGAAAAACGA---A
..((((((...(((---(.......((((((.....)))))).((((((((...)))))))))))).))))))..............................---. ( -24.00)
>DroSec_CAF1 23258 101 + 1
UGAGUUUCCUGGGUGACCAUGGGAUUUCCCUCCUCGUUGGCGCUAUUCGAUCAUAUUGAAUAGUAGACAGGAGAAUAUCAUGCCAAAGAUCUAA---AAACAA---A
.(((.(((((((....))).)))).))).(((((.(((...((((((((((...)))))))))).)))))))).....................---......---. ( -29.70)
>DroEre_CAF1 24539 104 + 1
UGAUUUUCCUGCGUGACCAUGGGAUUUCCCUGCUCUUUGGCGCUAUUCGAUCAUAUUGAAUAGUAGACAGGAGAAUAUCAUGCCAAAGAUCUAG---CGAUAGGAAA
....((((((((((......(((....)))...((((((((((((((((((...))))))))))......((.....))..))))))))....)---)).))))))) ( -34.50)
>DroYak_CAF1 40734 104 + 1
UGAUUUUCCUGCGUGACCAUGGGAUUUCCCUUCUCUUUGGCGCUAUUCGAUCAUAUUGAAUAGUAGACAGGAGAAUAUCAUGCCAAAGAUCUAG---AAAUAAGAAA
.((((((...((((((....(((....)))(((((((.(..((((((((((...))))))))))...))))))))..))))))..))))))...---.......... ( -30.20)
>DroPer_CAF1 20423 101 + 1
UGCUCUUGCAGCAG---CAACUCCUCGCCGAUCUCUUUGGCGCUAUUCAAUCAUAUUGAAUAGUAGACAAGAGAAUAUCAUGCCAAAAAUCUACGAAAAACGA---A
(((....)))(((.---......((((((((.....)))))((((((((((...))))))))))......))).......)))....................---. ( -23.64)
>consensus
UGAUUUUCCUGCGUGACCAUGGGAUUUCCCUUCUCUUUGGCGCUAUUCGAUCAUAUUGAAUAGUAGACAGGAGAAUAUCAUGCCAAAGAUCUAA___AAACAA___A
....................(((....)))...((((((((((((((((((...))))))))))......((.....))..)))))))).................. (-18.83 = -19.50 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 17,857,451 – 17,857,552
Length 101
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 81.29
Mean single sequence MFE -27.07
Consensus MFE -17.51
Energy contribution -17.85
Covariance contribution 0.34
Combinations/Pair 1.10
Mean z-score -1.93
Structure conservation index 0.65
SVM decision value 0.43
SVM RNA-class probability 0.735123
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17857451 101 - 23771897
U---UUAUUU---UUAGAUCUUUGGCAUGAUAUUCUCCUGUCUACUAUUCAAUAUGAUCGAAUAGCGCCAACGAGGAGGGGAAUCCCAUGGUCACGCAGGAAAAUCA
.---......---...(((.(((.((.((((...(((((((...((((((.........)))))).....)).)))))(((...)))...)))).))..))).))). ( -21.80)
>DroPse_CAF1 20391 101 - 1
U---UCGUUUUUCGUAGAUUUUUGGCAUGAUAUUCUCUUGUCUACUAUUCAAUAUGAUUGAAUAGCGCCAAAGAGAUCGGCGAGGAGUUG---CAGCUGCAAGAGCA
(---((.((((((((.((((((((((..((((......))))..(((((((((...))))))))).))))..)))))).))))))))(((---(....))))))).. ( -30.30)
>DroSec_CAF1 23258 101 - 1
U---UUGUUU---UUAGAUCUUUGGCAUGAUAUUCUCCUGUCUACUAUUCAAUAUGAUCGAAUAGCGCCAACGAGGAGGGAAAUCCCAUGGUCACCCAGGAAACUCA
.---..((((---((...((.(((((..((((......))))..((((((.........)))))).))))).))...(((....))).(((....)))))))))... ( -22.60)
>DroEre_CAF1 24539 104 - 1
UUUCCUAUCG---CUAGAUCUUUGGCAUGAUAUUCUCCUGUCUACUAUUCAAUAUGAUCGAAUAGCGCCAAAGAGCAGGGAAAUCCCAUGGUCACGCAGGAAAAUCA
((((((...(---((((.((((((((..((((......))))..((((((.........)))))).)))))))).).(((....))).)))).....)))))).... ( -29.80)
>DroYak_CAF1 40734 104 - 1
UUUCUUAUUU---CUAGAUCUUUGGCAUGAUAUUCUCCUGUCUACUAUUCAAUAUGAUCGAAUAGCGCCAAAGAGAAGGGAAAUCCCAUGGUCACGCAGGAAAAUCA
((((((....---.....((((((((..((((......))))..((((((.........)))))).))))))))...(((....)))..........)))))).... ( -25.90)
>DroPer_CAF1 20423 101 - 1
U---UCGUUUUUCGUAGAUUUUUGGCAUGAUAUUCUCUUGUCUACUAUUCAAUAUGAUUGAAUAGCGCCAAAGAGAUCGGCGAGGAGUUG---CUGCUGCAAGAGCA
.---..((((((.((((.((((((((..((((......))))..(((((((((...))))))))).))))))))...((((((....)))---))))))))))))). ( -32.00)
>consensus
U___UUAUUU___CUAGAUCUUUGGCAUGAUAUUCUCCUGUCUACUAUUCAAUAUGAUCGAAUAGCGCCAAAGAGAAGGGAAAUCCCAUGGUCACGCAGGAAAAUCA
..................((((((((..((((......))))..((((((.........)))))).))))))))...(((....))).................... (-17.51 = -17.85 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:54 2006