Locus 6695

Sequence ID 3L_DroMel_CAF1
Location 17,846,697 – 17,846,793
Length 96
Max. P 0.778734
window10894

overview

Window 4

Location 17,846,697 – 17,846,793
Length 96
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 62.94
Mean single sequence MFE -18.14
Consensus MFE -10.76
Energy contribution -10.24
Covariance contribution -0.52
Combinations/Pair 1.31
Mean z-score -1.43
Structure conservation index 0.59
SVM decision value 0.55
SVM RNA-class probability 0.778734
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17846697 96 + 23771897
CUACCACUGCCUCUAAUUACCCACUGAGGGGGGUAAGUCAUGCUAUUU----------------GAUAUUUAUGUAUA-AGCUAAAACUACGUAUAAACAUAAAACGACUACG
.((((.((.((((............))))))))))((((...(.....----------------)...(((((((.((-.((.........)).)).)))))))..))))... ( -16.40)
>DroSec_CAF1 11928 85 + 1
CUACCACUGCCUCCAACUAUCCACUGAGGGGGGUAAGUCGUGUUAUUC----------------GAUAUUUGUUUAUA-AACUAU-----UUUACAAACAAU------UUACU
.(((.(((((((((..(........)..)))))).))).)))......----------------.....((((((.((-((....-----)))).)))))).------..... ( -16.20)
>DroSim_CAF1 15990 85 + 1
CUACAACUGCCUCUAACUAUCCACUGAGAGGGGUAAGUCGUGUUAUUC----------------GAUAUUUAUUUAUA-AGCUAU-----UUUAUAAACAAU------UCACU
.(((.(((((((((..(........)..)))))).))).)))......----------------((...((.((((((-((....-----)))))))).)).------))... ( -13.10)
>DroEre_CAF1 14324 97 + 1
CUACGACUGCCUCUAACUAUCCACUGAGGGGGGUAUGUCGUAUUUUUCUAAUUG---UAAAUUACAAAAUGAUAUAUAGUUCCUCAACUAUAG------------CGCUCCC-
.(((((((((((((..(........)..))))))).))))))....((...(((---((...)))))...))..(((((((....))))))).------------.......- ( -21.80)
>DroYak_CAF1 31003 108 + 1
CUACGACUGCCUCUAACUAUCCACUGAGGGGGGUAAGUCGUAUUAUC-AAUUUACAUUUAAUCCCACAUUUAUUUAUA-UGCCAGAACUACAUAU--ACAUCAUAUGUGUAC-
.(((((((((((((..(........)..)))))).))))))).....-................(((((..((.((((-((.........)))))--).))...)))))...- ( -23.20)
>consensus
CUACCACUGCCUCUAACUAUCCACUGAGGGGGGUAAGUCGUGUUAUUC________________GAUAUUUAUUUAUA_AGCUAUAACUAUAUAUAAACAAU____G_UUAC_
.(((.(((((((((..(........)..))))))).)).)))....................................................................... (-10.76 = -10.24 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:48 2006