| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,834,927 – 17,835,032 |
| Length | 105 |
| Max. P | 0.500000 |
| Location | 17,834,927 – 17,835,032 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 87.14 |
| Mean single sequence MFE | -28.00 |
| Consensus MFE | -22.95 |
| Energy contribution | -24.95 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.82 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17834927 105 - 23771897 CACUUCAACUUGAGCAUACGAGCUGCAAUAGGUAGCCUGUGCAUUUGUCCCCCGGCCACAUUAUCGCGAUAUGUGUUGUGAUAGUUUAGAAUUAACUUCUUUAUA ...(((.......(((((.(.(((((.....))))))))))).................(((((((((((....)))))))))))...))).............. ( -22.80) >DroSim_CAF1 10018 105 - 1 CAGUUCAACUUGAGCAUACGAGCUGCAAUGGGUAGCCUGUGCAUUUGUCCCCCGGCCACAAUAUCGCGAUUUGUGUUGUGAUAGUUUAGAAUGAACUUUUUUAUA .((((((..((((((.((((.(((((.....))))).))))....................(((((((((....)))))))))))))))..))))))........ ( -27.50) >DroEre_CAF1 9430 105 - 1 CACUUCAACUUAAGCAUACGGGCUGCAAUGGGCAGCCUGUGUAAUUGGCCCCCGGCAACAAUAUCGCGAUAUGUGUUGUGAUAGUUCAGAAUGAACAAUCUUAUA ..........(((..(((((((((((.....)))))))))))..)))(((...))).....(((((((((....)))))))))((((.....))))......... ( -33.70) >DroYak_CAF1 20382 105 - 1 CAAUUCAACUUAAGCAUGCGGGCUGCAAUGGGCAGCUUGUGCAAUUGGCCACCGGCCACCAUAUCGCGAAAUGUGUUAUGAUAGUUCAGAAUGAAAUUUCUUAUA ..((((.......((..(((((((((.....)))))))))))...(((((...))))).((((.(((.....))).))))........))))............. ( -28.00) >consensus CACUUCAACUUAAGCAUACGAGCUGCAAUGGGCAGCCUGUGCAAUUGGCCCCCGGCCACAAUAUCGCGAUAUGUGUUGUGAUAGUUCAGAAUGAACUUUCUUAUA ...((((..((((((.((((((((((.....))))))))))....(((((...)))))...(((((((((....)))))))))))))))..)))).......... (-22.95 = -24.95 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:47 2006