| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,824,699 – 17,824,819 |
| Length | 120 |
| Max. P | 0.646622 |
| Location | 17,824,699 – 17,824,819 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.83 |
| Mean single sequence MFE | -34.82 |
| Consensus MFE | -27.10 |
| Energy contribution | -26.70 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.646622 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17824699 120 - 23771897 ACUUGAGCAUACGAGCUGCAAUGGGUAGCCUGUGCAUUUGACCCCCGGCCACAAUAUCGCGAUAUGUGUUGUGAUGGUUUAGAAUUAACUUUUUUAUAUGCUUGGGUACGUCAAUGAUUU ......(((((.(.(((((.....)))))))))))..((((((((.(((.....(((((((((....)))))))))((.(((((.......))))).))))).)))...)))))...... ( -32.10) >DroSec_CAF1 6933 120 - 1 ACUUGAGCAUACGAGCUGCAAUGGGUAGCCUGUGCAUUUGACCCCCGGCCACAAUAUCGCGAUAUGUGUUGUGAUAGUUUAAAAUGAACUUUUUUAUAUGCUUGGGUACGUCAAUGAUUU ......(((((.(.(((((.....)))))))))))..((((((((.(((.....(((((((((....)))))))))((((.....))))..........))).)))...)))))...... ( -33.30) >DroSim_CAF1 6555 120 - 1 ACUUGAGCAUACGAGCUGCAAUGGGUAGCCUGUGCAUUUGUCCCCCGGCCACAAUAUCGCGAUUUGUGUUGUGAUAGUUUAGAAUGAACUUUUUUAUAUGCUUGGGUACGUCAAUGAUUU ..(((((((((.(.(((((.....)))))))))))....((.(((.(((.....(((((((((....)))))))))((((.....))))..........))).))).)).))))...... ( -33.20) >DroEre_CAF1 7171 120 - 1 ACUUAAGCAUACGGGCUGCAAUGGGCAGCCUGUGUAAUUGGCCCCCGGCAACAAUAUCGCGAUAUGUGUUGUGAUAGUUCAGAAUGAACAAUCUUAUAUGCUUGGGUAUUGAAAUGAUUG (((((((((((((((((((.....))))))))))).....(((...))).....(((((((((....)))))))))((((.....))))..........))))))))............. ( -42.00) >DroYak_CAF1 7605 120 - 1 ACUUAAGCAUGCGGGCUGCAAUGGGCAGCUUGUGCAAUUGGCCACCGGCCACCAUAUCGCGAAAUGUGUUAUGAUAGUUCAGAAUGAAAUUUCUUAUAUGCUGGGGUAUUGAAACAAUUG (((..((((((((((((((.....))))))((((....(((((...))))).)))).)))(((((..(((.(((....))).)))...)))))....)))))..)))............. ( -33.50) >consensus ACUUGAGCAUACGAGCUGCAAUGGGUAGCCUGUGCAUUUGACCCCCGGCCACAAUAUCGCGAUAUGUGUUGUGAUAGUUUAGAAUGAACUUUUUUAUAUGCUUGGGUACGUCAAUGAUUU (((((((((((..((..((...((((.((....)).....))))...)).....(((((((((....)))))))))................))..)))))))))))............. (-27.10 = -26.70 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:46 2006