| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,820,252 – 17,820,348 |
| Length | 96 |
| Max. P | 0.544090 |
| Location | 17,820,252 – 17,820,348 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 78.02 |
| Mean single sequence MFE | -25.95 |
| Consensus MFE | -14.76 |
| Energy contribution | -16.23 |
| Covariance contribution | 1.47 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.544090 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17820252 96 - 23771897 --------------UGUCUUAGCUGAGGCACUGCACCUUGGAAUAACUUUGUGUGGAGAUAUCCCCUGUGAGUCAUUGG-UAAUAAUCCCCGAUGAUCACAAGACUCCAAU --------------((((((....))))))..((((...(......)...))))((((...((...(((((.(((((((-.........)))))))))))).))))))... ( -24.40) >DroSec_CAF1 2343 96 - 1 --------------UGUCUUAACUGAGGCACUGCACCAUGGGAUAACUUUGUGUGAAGACAUCCCCUGUGAGUCAUUGG-UAAUAAUCCCCGAUGAUCACAAGACUCCAAU --------------.(((((...((..((...))..)).(((((..((((....))))..)))))..((((.(((((((-.........))))))))))))))))...... ( -25.40) >DroSim_CAF1 2342 96 - 1 --------------UGUCUUAACUGAGGCACUGCACCAUGGGAUAACUUUGUGUGAAGAUAUCCCCUGUGAGUCAUUGG-UAAUAAUCCCCGAUGAUCACAAGACUCCAAU --------------.(((((...((..((...))..)).((((((.((((....)))).))))))..((((.(((((((-.........))))))))))))))))...... ( -27.70) >DroEre_CAF1 2471 96 - 1 --------------UGGGUUAGCUGAGACACUACACCUUGGGAUAACUUUAUGUGGAGAUAUCCCCUGUUAGUCAUCGG-AAAUAAUCCCCGAUGAUCACAAGACUCUAAU --------------.(((((...(((....(((.((...((((((.((((....)))).))))))..)))))(((((((-.........))))))))))...))))).... ( -25.10) >DroYak_CAF1 2390 95 - 1 --------------UGCGUUAGCUGAGACACUGCACCUUGGGAUGAAUUUGUGUG-AGAUAUCCCCUGUUAGUCAUCGG-AAUUAGUCCCCGAUGAUCACAAGACUCCAAU --------------.((....)).(((............((((((..((.....)-)..))))))((....((((((((-.........))))))))....)).))).... ( -21.50) >DroPer_CAF1 2485 107 - 1 UAACCUAGAGGAUCCGAGUCAAUUGAGA---UGCAUAUGUAGAUGCGUUUAUAAUCAGAUUU-CCCACUUAGUCAUCGGGGGAUCAUACCCGAUGAUCACAAGACUCAAAU ...((....))....(((((.....(((---(((((......))))))))............-........(((((((((........))))))))).....))))).... ( -31.60) >consensus ______________UGUCUUAACUGAGACACUGCACCUUGGGAUAACUUUGUGUGAAGAUAUCCCCUGUGAGUCAUCGG_UAAUAAUCCCCGAUGAUCACAAGACUCCAAU ........................(((............((((((.((((....)))).))))))((....((((((((..........))))))))....)).))).... (-14.76 = -16.23 + 1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:45 2006